View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_low_69 (Length: 229)

Name: NF2097_low_69
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_low_69
NF2097_low_69
[»] chr4 (17 HSPs)
chr4 (9-111)||(31175742-31175844)
chr4 (112-208)||(52545251-52545347)
chr4 (112-206)||(24807409-24807503)
chr4 (111-196)||(23985758-23985843)
chr4 (112-197)||(3529308-3529393)
chr4 (126-197)||(7040360-7040431)
chr4 (126-197)||(18656107-18656178)
chr4 (126-197)||(23564836-23564907)
chr4 (126-197)||(52518758-52518829)
chr4 (126-197)||(52520600-52520671)
chr4 (126-197)||(23566510-23566581)
chr4 (112-175)||(18395817-18395880)
chr4 (166-207)||(51295202-51295243)
chr4 (126-197)||(3274601-3274672)
chr4 (112-163)||(18320063-18320114)
chr4 (112-163)||(18398569-18398620)
chr4 (153-197)||(54296454-54296498)
[»] chr6 (15 HSPs)
chr6 (112-208)||(32079895-32079991)
chr6 (111-208)||(14611068-14611165)
chr6 (112-197)||(33869231-33869316)
chr6 (112-197)||(15868377-15868462)
chr6 (112-197)||(33866084-33866169)
chr6 (112-186)||(14620496-14620570)
chr6 (111-197)||(15866564-15866650)
chr6 (126-197)||(5376876-5376947)
chr6 (126-197)||(5378731-5378802)
chr6 (126-197)||(15149206-15149277)
chr6 (128-196)||(1088815-1088883)
chr6 (126-197)||(19645461-19645532)
chr6 (154-196)||(9415095-9415137)
chr6 (176-208)||(14618973-14619005)
chr6 (126-190)||(28884423-28884487)
[»] scaffold0006 (1 HSPs)
scaffold0006 (111-208)||(39129-39226)
[»] chr5 (3 HSPs)
chr5 (111-197)||(39787220-39787306)
chr5 (118-190)||(25076284-25076356)
chr5 (118-190)||(25134253-25134325)
[»] chr7 (7 HSPs)
chr7 (108-197)||(37405611-37405700)
chr7 (126-197)||(20046658-20046729)
chr7 (126-197)||(28124749-28124820)
chr7 (126-197)||(28126576-28126647)
chr7 (126-197)||(44963162-44963233)
chr7 (126-197)||(4895583-4895654)
chr7 (111-174)||(25471955-25472018)
[»] chr1 (14 HSPs)
chr1 (112-197)||(3282786-3282871)
chr1 (112-197)||(3284487-3284572)
chr1 (112-197)||(9312014-9312099)
chr1 (112-196)||(37664717-37664801)
chr1 (112-196)||(37674439-37674523)
chr1 (111-208)||(902061-902158)
chr1 (112-197)||(9310397-9310482)
chr1 (112-196)||(37702171-37702255)
chr1 (112-186)||(5924946-5925020)
chr1 (126-197)||(16808740-16808811)
chr1 (126-197)||(17449310-17449381)
chr1 (126-175)||(48940675-48940724)
chr1 (169-208)||(33773132-33773171)
chr1 (118-165)||(36580553-36580600)
[»] chr8 (10 HSPs)
chr8 (112-208)||(14935562-14935658)
chr8 (126-197)||(3375584-3375655)
chr8 (126-197)||(30224229-30224300)
chr8 (126-197)||(3379275-3379346)
chr8 (126-197)||(5567425-5567496)
chr8 (126-197)||(6428739-6428810)
chr8 (126-175)||(31032182-31032231)
chr8 (155-197)||(36535993-36536035)
chr8 (126-197)||(25249002-25249076)
chr8 (156-197)||(29274808-29274849)
[»] scaffold0251 (1 HSPs)
scaffold0251 (112-197)||(6211-6296)
[»] scaffold0057 (1 HSPs)
scaffold0057 (107-197)||(58766-58856)
[»] chr3 (3 HSPs)
chr3 (126-197)||(17402944-17403015)
chr3 (138-197)||(6789631-6789690)
chr3 (169-208)||(41874441-41874480)
[»] chr2 (3 HSPs)
chr2 (126-197)||(29758119-29758190)
chr2 (119-186)||(18739664-18739730)
chr2 (155-195)||(20516116-20516156)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 31175742 - 31175844
Alignment:
Q  9 gataattctcttgctaacgtgataagttttgttttgttataccattgactctatacttgtgcttaatgttttttcaaaattaaactctgaaatttatcat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  31175742 gataattctcttgctaacgtgataagttttgttttgttataccattgactctatacttgtgcttaatgttttttcaaaattaaactttgaaatttatcgt 31175841  T
Q  109 ttt 111  Q
    |||    
T  31175842 ttt 31175844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 52545347 - 52545251
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttacacaactaaact 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  52545347 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttacacaactaaact 52545251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 24807409 - 24807503
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttacacaactaaa 206  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  24807409 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagaagcttggttaagagttaggaagagttagttacacaactaaa 24807503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 23985758 - 23985843
Alignment:
Q  111 ttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagtta 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  23985758 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagtta 23985843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 3529393 - 3529308
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  3529393 tattagagtatgaataatcaactgtagttagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttac 3529308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 7040360 - 7040431
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||    
T  7040360 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttac 7040431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 18656107 - 18656178
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||    
T  18656107 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttagagttagttac 18656178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 23564907 - 23564836
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||    
T  23564907 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttac 23564836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 52518758 - 52518829
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  52518758 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 52518829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 52520600 - 52520671
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  52520600 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 52520671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 23566581 - 23566510
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||||  |||||||||||| |||||||    
T  23566581 taatcaactatagttagttgataagtaaactagacttagtagcttggttagaagttagttagaggtagttac 23566510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 18395880 - 18395817
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggtta 175  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||    
T  18395880 tattatagtatgaataatcaactatagttagttgataggtaaactatagttaataggttggtta 18395817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 51295202 - 51295243
Alignment:
Q  166 agcttggttaagagttagttagagttagttacacaactaaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51295202 agcttggttaagagttagttagagttagttacacaactaaac 51295243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 3274672 - 3274601
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||||||||  ||||||||||||||||| ||||||||| ||||| |||  ||||||||||||||| ||||    
T  3274672 taatcaactataattagttgataggtaaacaagagttagtggcttgattagaagttagttagagttaattac 3274601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 18320063 - 18320114
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagtta 163  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  18320063 tattacagtatgaataatcaactatagttaattgataggtaaactagagtta 18320114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 18398620 - 18398569
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagtta 163  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  18398620 tattacagtatgaataatcaactatagttaattgataggtaaactagagtta 18398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 54296454 - 54296498
Alignment:
Q  153 aactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||||||||||||||||||||  ||||||||||||||||||||    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttac 54296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 32079895 - 32079991
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttacacaactaaact 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32079895 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagaagcttggttaagagttagttagagttagttacacaactaaact 32079991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 14611068 - 14611165
Alignment:
Q  111 ttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttacacaactaaact 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  14611068 ttattagagtatgaataatcaactatggttagttgataggtaaattagagttagtagcttcgttaagagttatttagagttagttacacaactaaact 14611165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 33869231 - 33869316
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33869231 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 33869316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 15868377 - 15868462
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  15868377 tattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttac 15868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 33866084 - 33866169
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33866084 tattagagtattaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 33866169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 14620496 - 14620570
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagtta 186  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14620496 tattagagtatgaataatcaactatgattagttgataggtaaactacagttagtagcttggttaagagttagtta 14620570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 15866564 - 15866650
Alignment:
Q  111 ttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||  ||||||||||||||||||||    
T  15866564 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttac 15866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 5376876 - 5376947
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  5376876 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 5376947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 5378731 - 5378802
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  5378731 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 5378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 15149277 - 15149206
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||| || |||||||||||||  ||||||||||||||||||||    
T  15149277 taatcaactatagttagttgataagtaaactagggtcagtagcttggttagaagttagttagagttagttac 15149206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 1088883 - 1088815
Alignment:
Q  128 atcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagtta 196  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| ||||  |||||||||||||||||||    
T  1088883 atcaactatagttagttgataagtaaattagagttagtagctttgttagaagttagttagagttagtta 1088815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 19645532 - 19645461
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||| ||| ||||||||||| |||||||| |||||||||||||||||  | ||||| |||| |||||||    
T  19645532 taatcaattatagttagttgataagtaaactaaagttagtagcttggttagaaattagtcagaggtagttac 19645461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 9415095 - 9415137
Alignment:
Q  154 actagagttagtagcttggttaagagttagttagagttagtta 196  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagtta 9415137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 14618973 - 14619005
Alignment:
Q  176 agagttagttagagttagttacacaactaaact 208  Q
    |||||||||||||||||||||||||||||||||    
T  14618973 agagttagttagagttagttacacaactaaact 14619005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 28884487 - 28884423
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagt 190  Q
    |||||| |||| |||||||||||||| |||||||||||| ||||| ||| | |||| ||||||||    
T  28884487 taatcagctatagttagttgataggttaactagagttagaagctttgtttatagttggttagagt 28884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 39129 - 39226
Alignment:
Q  111 ttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttacacaactaaact 208  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  39129 ttattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttacacaactaaact 39226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 39787306 - 39787220
Alignment:
Q  111 ttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  39787306 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 39787220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 25076356 - 25076284
Alignment:
Q  118 agtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagt 190  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||| |||   ||| |||||||||||||||    
T  25076356 agtatgaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagt 25076284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 25134325 - 25134253
Alignment:
Q  118 agtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagt 190  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||| |||   ||| |||||||||||||||    
T  25134325 agtatgaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagt 25134253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 37405700 - 37405611
Alignment:
Q  108 tttttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||    
T  37405700 tttttattagagtatgaataatcaactatagttagttgatagataaactagagttagtagcttggttagaagttagttagagttagttac 37405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 20046729 - 20046658
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  20046729 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 20046658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 28124820 - 28124749
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  28124820 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 28124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 28126647 - 28126576
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  28126647 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 28126576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 44963162 - 44963233
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  44963162 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttac 44963233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 4895583 - 4895654
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||| ||||    
T  4895583 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttatttac 4895654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 25472018 - 25471955
Alignment:
Q  111 ttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggtt 174  Q
    |||||| |||||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||    
T  25472018 ttattatagtatgaataattaactatagttagttgataggttaactagagttagtaggttggtt 25471955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 3282786 - 3282871
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  3282786 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 3282871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 3284487 - 3284572
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  3284487 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 3284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 9312014 - 9312099
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9312014 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 9312099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 37664801 - 37664717
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagtta 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  37664801 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagtta 37664717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 37674523 - 37674439
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagtta 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  37674523 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagtta 37674439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 902061 - 902158
Alignment:
Q  111 ttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttacacaactaaact 208  Q
    |||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||    
T  902061 ttattataatatgaataatcatctatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacacaattaaact 902158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 9310397 - 9310482
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9310397 tattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttac 9310482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 37702171 - 37702255
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagtta 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  37702171 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaaattagttagagttagtta 37702255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 5925020 - 5924946
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagtta 186  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||  |||||||||    
T  5925020 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagtagtttggttagaagttagtta 5924946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 16808811 - 16808740
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  16808811 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 16808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 17449310 - 17449381
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||| ||||  ||||||||||||||||||||    
T  17449310 taatcaactatagttagttgataagtaaactagggttagtagcttcgttagaagttagttagagttagttac 17449381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 48940675 - 48940724
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggtta 175  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  48940675 taatcaactatagttagttgataagtaaactagagttagtagtttggtta 48940724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 33773132 - 33773171
Alignment:
Q  169 ttggttaagagttagttagagttagttacacaactaaact 208  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  33773132 ttggttaagagttagttagagttagttacacgactaaact 33773171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 36580553 - 36580600
Alignment:
Q  118 agtatgaataatcaactatggttagttgataggtaaactagagttagt 165  Q
    ||||||||||||| ||||| | |||||||||||| |||||||||||||    
T  36580553 agtatgaataatctactatagatagttgataggttaactagagttagt 36580600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 14935562 - 14935658
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttacacaactaaact 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||  ||||||||||| ||||||| |||||||||||    
T  14935562 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtaacttggttagaagttagttagaattagttatacaactaaact 14935658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 3375655 - 3375584
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  3375655 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttac 3375584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 30224229 - 30224300
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||    
T  30224229 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttac 30224300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 3379346 - 3379275
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| |||||||||||| ||||||||||||||||| || ||||  ||||||||||||||||||||    
T  3379346 taatcaactatagttagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttac 3379275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 5567425 - 5567496
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| ||||  |||||||| |||||||||||    
T  5567425 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttggagttagttac 5567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 6428739 - 6428810
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||||||||  |||||||||| ||||||||||||||||| ||| ||||| |||||||||||| |||||||    
T  6428739 taatcaactataattagttgataagtaaactagagttagtaccttagttaaaagttagttagaggtagttac 6428810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 31032231 - 31032182
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggtta 175  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  31032231 taatcaactatagttagttgataagtaaactagggttagtagcttggtta 31032182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 36536035 - 36535993
Alignment:
Q  155 ctagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttac 36535993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 25249002 - 25249076
Alignment:
Q  126 taatcaactatggttagttgatag---gtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| |||| ||||||    ||||||||||||||||||||||||||  ||||||||| || |||||||    
T  25249002 taatcaactatagttaattgataataagtaaactagagttagtagcttggttagaagttagttaaaggtagttac 25249076  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 29274849 - 29274808
Alignment:
Q  156 tagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  29274849 tagagttagtagcttggttacgggttagttagagttaattac 29274808  T

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Target: scaffold0251 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 6211 - 6296
Alignment:
Q  112 tattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  6211 tattagagtatgaataatcaactatagttaattgataggtaaactagagttagtagcttggttagaagttagttagagttagttac 6296  T

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Target: scaffold0057 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 58766 - 58856
Alignment:
Q  107 atttttattagagtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||| ||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  58766 atttgtattagaatatgaataatcaactatagttagttagtaggtaaactagagttagtagcttggttagaagttagttagagttagttac 58856  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 17403015 - 17402944
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  17403015 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttac 17402944  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 6789631 - 6789690
Alignment:
Q  138 gttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    |||||| |||| || |||||||||||||||||||||||  ||||||||||||||||||||    
T  6789631 gttagtggataagtgaactagagttagtagcttggttagaagttagttagagttagttac 6789690  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 41874441 - 41874480
Alignment:
Q  169 ttggttaagagttagttagagttagttacacaactaaact 208  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41874441 ttggttaagagttagttagagttagttacacaactaaact 41874480  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 29758119 - 29758190
Alignment:
Q  126 taatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagttagagttagttac 197  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||    
T  29758119 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttac 29758190  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 18739664 - 18739730
Alignment:
Q  119 gtatgaataatcaactatggttagttgataggtaaactagagttagtagcttggttaagagttagtta 186  Q
    |||||| ||||||| ||| ||||||||||| || |||||||||||||||  ||||| |||||||||||    
T  18739664 gtatgattaatcaattatagttagttgatacgttaactagagttagtagtctggtt-agagttagtta 18739730  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 20516156 - 20516116
Alignment:
Q  155 ctagagttagtagcttggttaagagttagttagagttagtt 195  Q
    |||| ||||||||||||||||| || |||||||||||||||    
T  20516156 ctagggttagtagcttggttaaaagatagttagagttagtt 20516116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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