View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2097_low_7 (Length: 482)
Name: NF2097_low_7
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 12641208 - 12641641
Alignment:
| Q |
1 |
tattggaaatgaaagagaaacaacgggg-agagaagaatgcagaaatcgccgatttgagaggatatacacaaataaaattcaatttcttttaaaggttta |
99 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12641208 |
tattggaaatgaaagagaaatgacgggggagagaagaatgcagaaatcaccgatttgagaggatatacacaaataaaattcaatttcttttaaaggttta |
12641307 |
T |
|
| Q |
100 |
gaggaaaatattcccatttcaaatctaatcgtcgatcttcctacgcgtgaactgaactaatcgtcaacaatatgtagaggcagaaaaacttgtatatgaa |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
12641308 |
gaagaaaatattcccatttcaaatctaatcgtctatcttcctacgcgtgaactgaactaatcgtcaacaatatgtagaggcggaaaaacttctatatg-a |
12641406 |
T |
|
| Q |
200 |
aagttaagaatgtgttttctgaaccatttnnnnnnnnnnnnttaaattattacgtcnnnnnnnggcgggaatcacgggcatgttattgtgtaaatcaact |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12641407 |
aagttaagaatgtgttttcttaaccattt----aaaaaaaattaaattattacgtctttttttggcgggaatcacgggcatgttattgtgtaaatcaact |
12641502 |
T |
|
| Q |
300 |
gctcaaaaatattcttgtgtctcttcaaagtgtctttgtaggaaagaacaatttcaataaaataaaatcataccaatgtggataatgagaataggaaaat |
399 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12641503 |
ggtcaaaaatattcttgtgtctcttcaaagtgtctttgtaggaaagaacaatttcaataaaataaaatcataccaatgtggataatgagaataggaaaat |
12641602 |
T |
|
| Q |
400 |
acctaggtctcagtatcataagacaacgaaattttagac |
438 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12641603 |
acctaggtctcaatatcataagacaacgaaattttagac |
12641641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Original strand, 12641682 - 12641713
Alignment:
| Q |
451 |
cacttatttgctaacatgctttctcaaacaat |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12641682 |
cacttatttgctaacatgctttctcaaacaat |
12641713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University