View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_low_75 (Length: 227)

Name: NF2097_low_75
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_low_75
NF2097_low_75
[»] chr6 (3 HSPs)
chr6 (40-227)||(30762014-30762198)
chr6 (71-210)||(30751588-30751726)
chr6 (2-41)||(30762414-30762454)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 30762198 - 30762014
Alignment:
Q  40 aacaattatccattaggttagaatgtactctcccaaagcataagcattactaaggaagaagagctttcaaccctaattcttcaagctttgcagcaacatc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30762198 aacaattatccattaggttagaatgtactctcccaaagcataagcattactaaggaagaagagctttcaaccctaattcttcaagctttgcagcaacatc 30762099  T
Q  140 gctctgatggccattagatcattcgattatacaaggtgcacaagttaccatcatatatcaatactaattatgccatatgtcatataat 227  Q
    ||||||||||||||||||||  || ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30762098 gctctgatggccattagatcgatc-at--tacaaggtgcacaatttaccatcatatatcaatactaattatgccatatgtcatataat 30762014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 30751726 - 30751588
Alignment:
Q  71 cccaaagcataagcattactaaggaagaagagctttcaaccctaattcttcaagctttgcagcaacatcgctctgatggccattagatcattcgattata 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||||||||||    
T  30751726 cccaaagcataagcattactaaggaagaagagctttcaaccctaattcttcaagccttccagcaccatcgctctaatggccattagatcattcgattata 30751627  T
Q  171 caaggtgcacaagttaccatcatatatcaatactaattat 210  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  30751626 caaggtgcacaatttaccatcatat-tcaatactaattat 30751588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 30762454 - 30762414
Alignment:
Q  2 tacttttaaaccgtaattat-aatattgcactatatttgaa 41  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  30762454 tacttttaaaccgtaattataaatattgcactatatttgaa 30762414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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