View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_76 (Length: 227)
Name: NF2097_low_76
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_76 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 55173671 - 55173445
Alignment:
| Q |
1 |
gatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttatgaagagaag |
100 |
Q |
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| T |
55173671 |
gatgaaagatgagaagctctttgctccccaaggaggccccatcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttatgaagagaag |
55173572 |
T |
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| Q |
101 |
ggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcg |
200 |
Q |
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| T |
55173571 |
ggagatagttatgttcagtgggccgcaaatatggcagtggccttggacatcggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcg |
55173472 |
T |
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| Q |
201 |
taagtaattaattttaggcataaaaca |
227 |
Q |
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| T |
55173471 |
taagtaattaattttaggcataaaaca |
55173445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 27721147 - 27721296
Alignment:
| Q |
56 |
attgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggag |
155 |
Q |
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| T |
27721147 |
attgagaatgagtacaaccacatccaacttgcttatgaagctgatggagataattatgttcagtgggctgcaaaaatggcagtttcactatataatggag |
27721246 |
T |
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| Q |
156 |
ttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
205 |
Q |
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| T |
27721247 |
ttccatgggtcatgtgcaagcagaaggatgctcctgatccagttgtaagt |
27721296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 27720986 - 27721035
Alignment:
| Q |
2 |
atgaaagatgagaagctctttgctccccaaggaggccccatcatcttggc |
51 |
Q |
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| T |
27720986 |
atgaaagaagaaaaactctttgctcctcaaggaggccctatcatcttggc |
27721035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 42989343 - 42989290
Alignment:
| Q |
152 |
ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
205 |
Q |
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| T |
42989343 |
ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaagt |
42989290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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