View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2097_low_78 (Length: 220)
Name: NF2097_low_78
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_78 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 202
Target Start/End: Complemental strand, 33346107 - 33345960
Alignment:
| Q |
52 |
agaacaggattttgcttctactacaatacaagggtttatcacaccaaacagaacaagaacnnnnnnntggtgaacatccacatccaccattcatacacag |
151 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | || |||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
33346107 |
agaacaggatttggcttctactacaatacaa---tataccacaccaaacagtacaagaacaaaaaaatggtgaacatccacatctaccgttcatacacag |
33346011 |
T |
|
| Q |
152 |
tgacaccttcagagaaaacaccaaccaccacactctctctttccctctgtg |
202 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33346010 |
taacaccttcagagaaaacaccaaccaccacactctctctttccctctgtg |
33345960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 33334365 - 33334321
Alignment:
| Q |
156 |
accttcagagaaaacaccaaccaccacactctctctttccctctg |
200 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
33334365 |
accttccgagacaacaccaagcaccacactctctctttccctctg |
33334321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University