View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2097_low_79 (Length: 219)

Name: NF2097_low_79
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2097_low_79
NF2097_low_79
[»] chr7 (8 HSPs)
chr7 (15-219)||(29160204-29160407)
chr7 (57-161)||(24526344-24526448)
chr7 (57-148)||(22269375-22269464)
chr7 (57-139)||(12098247-12098328)
chr7 (165-207)||(24526275-24526318)
chr7 (54-95)||(1049743-1049783)
chr7 (134-208)||(22269471-22269547)
chr7 (81-161)||(41317873-41317953)
[»] chr8 (10 HSPs)
chr8 (15-219)||(9765346-9765550)
chr8 (21-160)||(26402684-26402823)
chr8 (14-161)||(6127725-6127872)
chr8 (57-189)||(18141459-18141591)
chr8 (132-208)||(26402837-26402914)
chr8 (57-161)||(5688889-5688992)
chr8 (129-213)||(6127629-6127715)
chr8 (57-161)||(40320724-40320827)
chr8 (57-161)||(8149939-8150042)
chr8 (134-211)||(30291307-30291386)
[»] chr5 (5 HSPs)
chr5 (14-189)||(10282182-10282358)
chr5 (15-161)||(3881233-3881379)
chr5 (57-199)||(28277735-28277877)
chr5 (17-101)||(16642578-16642662)
chr5 (130-162)||(3881190-3881222)
[»] chr3 (14 HSPs)
chr3 (15-153)||(3715441-3715579)
chr3 (15-157)||(47650074-47650216)
chr3 (16-161)||(25796280-25796424)
chr3 (57-208)||(9666845-9666997)
chr3 (129-219)||(3715597-3715687)
chr3 (129-219)||(47649970-47650060)
chr3 (61-161)||(28074043-28074142)
chr3 (57-161)||(29196858-29196961)
chr3 (60-208)||(44700869-44701018)
chr3 (130-195)||(29196781-29196847)
chr3 (119-161)||(31314215-31314257)
chr3 (57-104)||(24177032-24177078)
chr3 (130-186)||(25796212-25796269)
chr3 (129-161)||(31314246-31314278)
[»] chr2 (10 HSPs)
chr2 (17-161)||(42269872-42270016)
chr2 (15-161)||(31056546-31056692)
chr2 (57-161)||(34681825-34681928)
chr2 (57-208)||(33162806-33162958)
chr2 (129-219)||(34681938-34682029)
chr2 (140-219)||(8040466-8040546)
chr2 (57-161)||(36773188-36773291)
chr2 (129-208)||(42269781-42269862)
chr2 (129-208)||(31056455-31056536)
chr2 (80-153)||(11066953-11067026)
[»] chr6 (2 HSPs)
chr6 (15-157)||(21800871-21801012)
chr6 (57-161)||(3039361-3039465)
[»] scaffold0148 (2 HSPs)
scaffold0148 (15-161)||(11231-11376)
scaffold0148 (129-219)||(11131-11221)
[»] chr1 (12 HSPs)
chr1 (15-161)||(47703387-47703532)
chr1 (13-161)||(40816285-40816432)
chr1 (134-217)||(47703547-47703630)
chr1 (15-139)||(19073390-19073507)
chr1 (15-139)||(19121280-19121397)
chr1 (57-161)||(28266014-28266117)
chr1 (57-160)||(47255992-47256093)
chr1 (123-161)||(776950-776988)
chr1 (150-208)||(19073340-19073400)
chr1 (150-208)||(19121230-19121290)
chr1 (55-95)||(10400299-10400338)
chr1 (129-161)||(45644802-45644834)
[»] chr4 (10 HSPs)
chr4 (14-161)||(24334553-24334699)
chr4 (97-208)||(46147733-46147846)
chr4 (129-208)||(24334464-24334543)
chr4 (57-207)||(36463780-36463931)
chr4 (57-161)||(3793593-3793697)
chr4 (57-161)||(45687622-45687725)
chr4 (166-219)||(3793724-3793777)
chr4 (57-104)||(52467817-52467863)
chr4 (167-208)||(52467732-52467774)
chr4 (15-52)||(3792486-3792523)
[»] scaffold0477 (2 HSPs)
scaffold0477 (14-161)||(5404-5552)
scaffold0477 (129-189)||(5562-5623)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 29160407 - 29160204
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  29160407 tgttgaaaattgactcaagaattggatgtggaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcaggtttggcttt 29160308  T
Q  115 gttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactatacctgctccattgtggcacaattgg 214  Q
    ||  || ||||||||  ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||  |||||| |||||    
T  29160307 gtcact-gaaaaatcaaggcacgatccaggaggaacgtggcacgatgtagtggataaggtatactactgtactatacctgctccatcatggcacgattgg 29160209  T
Q  215 gtcga 219  Q
    |||||    
T  29160208 gtcga 29160204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 24526448 - 24526344
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagattt-gggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggc 155  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  24526448 aatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcaggttttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggc 24526350  T
Q  156 acgatg 161  Q
    | ||||    
T  24526349 atgatg 24526344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 22269375 - 22269464
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggagga 148  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||  |||||||| ||  ||||||||||||||||||||||||||||||    
T  22269375 aatcgtggcacg-tttgcagggcaacgtggcacgatttgatggttcaagtttgggtt-gtcactggaaaaatcgtggcacgatccaggagga 22269464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 12098328 - 12098247
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgat 139  Q
    |||||||||||| |||||||||||||||| ||||||||  |||||||| ||| || |||   |||||||||||||||||||||    
T  12098328 aatcgtggcacg-tttgcagggcaacgtgacacgattgaatggttcagtttttggattgccactggaaaaatcgtggcacgat 12098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 24526318 - 24526275
Alignment:
Q  165 cggataaggtatagtactgtactat-acctgctccattgtggca 207  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  24526318 cggataaggtatagtactgtactatcacctgctccatcgtggca 24526275  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 1049783 - 1049743
Alignment:
Q  54 aggaatcgtggcacgatttgcagggcaacgtggcacgattgg 95  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  1049783 aggaatcgtggcacgatt-gctgggcaacgtggcacgattgg 1049743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 22269471 - 22269547
Alignment:
Q  134 cacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    |||||| ||||||||||||||||| ||  | ||||||||||| ||||| |||||||| ||||||||||  |||||||    
T  22269471 cacgattcaggaggaacgtggcacaattcagacggataaggtgtagtattgtactatcacctgctccaacgtggcac 22269547  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 41317953 - 41317873
Alignment:
Q  81 acgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    ||||||||||||||  | |||||| ||| || |||   || |||||||||||||||||| ||||||  |||||||||||||    
T  41317953 acgtggcacgattgaattgttcagtttttgggttgccactcgaaaaatcgtggcacgatgcaggagatacgtggcacgatg 41317873  T

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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 9765346 - 9765550
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  9765346 tgttgaaaattgactcaagaatttgatgttgaagcactgagaaatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcatatttgggttt 9765444  T
Q  115 gttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcacaatt 212  Q
    ||  | ||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||| ||     
T  9765445 gtcac-ggaaaaatcatggcacgatccaggaggaacgtggcacgatgcagacagataaggtatagtactgtactatcacctgctccattgtggcacgatg 9765543  T
Q  213 gggtcga 219  Q
    |||||||    
T  9765544 gggtcga 9765550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 26402684 - 26402823
Alignment:
Q  21 aaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcaga-tttgggtttgttgc 119  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| | ||    
T  26402684 aaattgactcaagaattggatgttgaagcgctgagaaatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcagattttgggtttatagc 26402782  T
Q  120 tggaaaaatcgtggcacgatccaggaggaacgtggcacgat 160  Q
    ||||||| |||||||||||| ||||| ||||||| ||||||    
T  26402783 tggaaaattcgtggcacgattcaggatgaacgtgacacgat 26402823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 6127872 - 6127725
Alignment:
Q  14 ttgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcaga-tttgggt 112  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||| || ||||| |||||||||||| ||||||||||||| ||||||||| |||||||    
T  6127872 ttgttgaaaattgactcaagaattggatattgaagcactgagaaattgtagcacg-tttgcagggcaatgtggcacgattggatggttcagattttgggt 6127774  T
Q  113 ttgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |||| ||| ||||||| |||||||||||||  ||||||||| |||||||    
T  6127773 ttgtcgctagaaaaattgtggcacgatccaataggaacgtgacacgatg 6127725  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 18141459 - 18141591
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| ||||||||||||||| |||||||||   ||||||| ||| || |||   ||||||||||  ||||||||||||||||||||||||||    
T  18141459 aatcgtggcacg-tttgcagggcaacgtcgcacgattgaacggttcagtttttgggttgccactggaaaaattatggcacgatccaggaggaacgtggca 18141557  T
Q  157 cgatgta-acggataaggtatagtactgtactat 189  Q
    ||||| | ||||||||||||||||| ||||||||    
T  18141558 cgatgcagacggataaggtatagtattgtactat 18141591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 26402837 - 26402914
Alignment:
Q  132 ggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactatacctgctccattgtggcac 208  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||    
T  26402837 ggcacgatccaggaggaacgtggcacgatgtggacggataaggtatagtactgtactatacctgctccatcgtggcac 26402914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 5688889 - 5688992
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| |||||||||||||||||||||||||  |||||||| |||  | ||||  ||| ||||||||||||||||||||||||||||||||||    
T  5688889 aatcgtggcacg-tttgcagggcaacgtggcacgattgaatggttcagttttttggttgtcactgaaaaaatcgtggcacgatccaggaggaacgtggca 5688987  T
Q  157 cgatg 161  Q
    |||||    
T  5688988 cgatg 5688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 6127715 - 6127629
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgt-aacggataaggtatagtactgtactat-acctgctccattgtggcacaattg 213  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  6127715 cgtggcacgatccaggaagaacgtggcacgatgtggacggataaggtatagtactgtactatcacctgctccatcgtggcacgattg 6127629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 40320724 - 40320827
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||| | |||||||||||||||||||||||||  |||||||| ||| || |||   |||||||||||||||||| ||  |||||||||||||||    
T  40320724 aatcgtggcatg-tttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacaatgtaggaggaacgtggca 40320822  T
Q  157 cgatg 161  Q
    |||||    
T  40320823 cgatg 40320827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 8150042 - 8149939
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| |||||||||||| ||||||||||||  |||||||| ||| || |||   || ||||| ||||||||||||| |||||||| ||| ||    
T  8150042 aatcgtggcacg-tttgcagggcaatgtggcacgattgaatggttcagtttttgggttgccactagaaaattcgtggcacgatctaggaggaatgtgaca 8149944  T
Q  157 cgatg 161  Q
    |||||    
T  8149943 cgatg 8149939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 30291307 - 30291386
Alignment:
Q  134 cacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcacaat 211  Q
    ||||||||||||| ||| || ||||||| | |||||||||||| |||| |||||||| ||||||||||| ||||||||||    
T  30291307 cacgatccaggagaaacatgacacgatgcagacggataaggtaaagtattgtactatcacctgctccatcgtggcacaat 30291386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 10282358 - 10282182
Alignment:
Q  14 ttgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagattt-gggt 112  Q
    ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||    
T  10282358 ttgttgaaaattgactcaagaattggatgttgaagcaccgagaaatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcaggttttgggt 10282260  T
Q  113 ttgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat 189  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  10282259 ttgtcgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcagacggataaggtatagtactgtactat 10282182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 3881379 - 3881233
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagattt-gggtt 113  Q
    |||||||||||||||||||| ||| || ||||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||    
T  3881379 tgttgaaaattgactcaagaattgaatattgaagcactgataaatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcaggttttgggtt 3881281  T
Q  114 tgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    | | | ||||||||||||||||||||||||||||||||||| ||||||    
T  3881280 tatcgttggaaaaatcgtggcacgatccaggaggaacgtggtacgatg 3881233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 199
Target Start/End: Original strand, 28277735 - 28277877
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| || |||||| ||||   ||||||||| |||||||||||||||||||  ||||||    
T  28277735 aatcgtggcacg-tttgcagggcaacgtggcacgattggatggtttaggtttggg-ttgtcattggaaaaattgtggcacgatccaggaggagtgtggca 28277832  T
Q  157 cgatgta-acggataaggtatagtactgtactat-acctgctcca 199  Q
    ||||  | ||||||||||| |||||||||| ||| ||||||||||    
T  28277833 cgattcagacggataaggtgtagtactgtaatatcacctgctcca 28277877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 16642662 - 16642578
Alignment:
Q  17 ttgaaaattgactcaagacttggatgttgaagcactg-aggaatcgtggcacgatttgcagggcaacgtggcacgattggttggtt 101  Q
    |||||||||||||||| | ||||||||| |||  ||| |  |||||||||||| ||||||| |||||||||||||||||| |||||    
T  16642662 ttgaaaattgactcaaaatttggatgttaaagttctggaaaaatcgtggcacg-tttgcagagcaacgtggcacgattggatggtt 16642578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 3881222 - 3881190
Alignment:
Q  130 gtggcacgatccaggaggaacgtggcacgatgt 162  Q
    |||||||||||||||||||||||||||||||||    
T  3881222 gtggcacgatccaggaggaacgtggcacgatgt 3881190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 3715441 - 3715579
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  3715441 tgttgaaaattgactcaagaattggatgttgaagcactgaggaaacgtggcatgatttgcagggcaacgtggcacgattggttggttcagatttgtgttt 3715540  T
Q  115 gttgctggaaaaatcgtggcacgatccaggaggaacgtg 153  Q
    || ||||||||||| ||||||||||||||||||||||||    
T  3715541 gtcgctggaaaaattgtggcacgatccaggaggaacgtg 3715579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 47650216 - 47650074
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47650216 tgttgaaaattgactcaaaaagtggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 47650117  T
Q  115 gttgctggaaaaatcgtggcacgatccaggaggaacgtggcac 157  Q
    || | |||||||||  |||||||||||||||||||||||||||    
T  47650116 gtcgttggaaaaattatggcacgatccaggaggaacgtggcac 47650074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 25796424 - 25796280
Alignment:
Q  16 gttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttg 115  Q
    ||||||||||||||||||| ||| ||||||||||  |||  |||||||||||| |||||||||||||||||||||||||| || ||||| ||| ||||||    
T  25796424 gttgaaaattgactcaagaattgaatgttgaagcggtgaaaaatcgtggcacg-tttgcagggcaacgtggcacgattggatgattcaggttttggtttg 25796326  T
Q  116 ttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |  |||||||||||||| ||||||||||||||||||||||||||||    
T  25796325 tcactggaaaaatcgtgacacgatccaggaggaacgtggcacgatg 25796280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 9666997 - 9666845
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| |||||||||||||||||||||||||   ||||||| ||| || |||   ||||||||||||||||||||||||||||||||||||||    
T  9666997 aatcgtggcacg-tttgcagggcaacgtggcacgattgaagggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggca 9666899  T
Q  157 cgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    ||||| | |||||||||||||| || |||||||| ||||||||||| |||||||    
T  9666898 cgatgcagacggataaggtataatattgtactatcacctgctccatcgtggcac 9666845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 3715597 - 3715687
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactatacctgctccattgtggcacaattgggtcga 219  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  3715597 cgtggcacgatccaggaggaacgtggcacaatgtagcggataaggtatagtactgtactatacctgctccatcgtggcacgattgggtcga 3715687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 47650060 - 47649970
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactatacctgctccattgtggcacaattgggtcga 219  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  47650060 cgtggcacgatccaggaggaacgtggcacgatgtagcggataaggtataatactgtactatacctgctgcattgtggcacgattgggtcga 47649970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 28074043 - 28074142
Alignment:
Q  61 gtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgat 160  Q
    |||||||| |||||||||||||||||||||||||  |||||||| ||| || |||   ||||||||||||||||||||||||||||||||||||||||||    
T  28074043 gtggcacg-tttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcacgat 28074141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 29196961 - 29196858
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| |||||||||||||||||||||||||  |||||||  ||| || |||   ||||||||||||||||||||||||||||||||||||||    
T  29196961 aatcgtggcacg-tttgcagggcaacgtggcacgattgaatggttcaatttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggca 29196863  T
Q  157 cgatg 161  Q
    |||||    
T  29196862 cgatg 29196858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 208
Target Start/End: Complemental strand, 44701018 - 44700869
Alignment:
Q  60 cgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacga 159  Q
    ||||||||| |||||||||||||||||||||||||  |||||||| ||| || ||    |||||||||||||||||||||||||||||||||| ||||||    
T  44701018 cgtggcacg-tttgcagggcaacgtggcacgattgaatggttcagtttttgggttaccactggaaaaatcgtggcacgatccaggaggaacgtagcacga 44700920  T
Q  160 tgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    || |  |||||||| |||| || |||||||| ||||| ||||| |||||||    
T  44700919 tgcaggcggataagatataatattgtactatcacctgttccatcgtggcac 44700869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 29196847 - 29196781
Alignment:
Q  130 gtggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactatacctgc 195  Q
    ||||||||||| |||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||    
T  29196847 gtggcacgatctaggaggaacgtggcacaatgtggacggataaggtatagtattgtactatacctgc 29196781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 31314215 - 31314257
Alignment:
Q  119 ctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  31314215 ctggaaaaatcgtggcacgatccaagaggaacgtggcacgatg 31314257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 24177032 - 24177078
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcag 104  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  24177032 aatcgtggcacg-tttgcagggcaacgtggcacgattggttgtttcag 24177078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 25796269 - 25796212
Alignment:
Q  130 gtggcacgatccaggaggaacgtggcacgatg-taacggataaggtatagtactgtac 186  Q
    ||||||||||  ||||||||||||||| |||  ||||| |||||||||||||||||||    
T  25796269 gtggcacgatgtaggaggaacgtggcaagattctaacgaataaggtatagtactgtac 25796212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 31314246 - 31314278
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatg 161  Q
    ||||||||||| |||||||||||||||||||||    
T  31314246 cgtggcacgatgcaggaggaacgtggcacgatg 31314278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 42270016 - 42269872
Alignment:
Q  17 ttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttca-gatttgggtttg 115  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| | |||| |||||    
T  42270016 ttgaaaattgactcaagaattggatgttgaagcactgagaaatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcaggttttgcgtttg 42269918  T
Q  116 ttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    | |||||||||||||||||| |||||||||||||||||||| ||||    
T  42269917 tcgctggaaaaatcgtggcaggatccaggaggaacgtggcatgatg 42269872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 31056692 - 31056546
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagattt-gggtt 113  Q
    |||||||||||||||||||| |||||||||||||| |||   ||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||    
T  31056692 tgttgaaaattgactcaagaattggatgttgaagctctgtaaaatcgtggcac-atttgcagggcaacgtggcacaattggatggttcagattttgggtt 31056594  T
Q  114 tgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |||  ||||||||||| ||||||||||||| |||||| ||||||||||    
T  31056593 tgtcactggaaaaatcatggcacgatccagaaggaacatggcacgatg 31056546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 34681825 - 34681928
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  34681825 aatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccagtaggaacgtggca 34681923  T
Q  157 cgatg 161  Q
    |||||    
T  34681924 cgatg 34681928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 33162958 - 33162806
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||| | |||| |||| |||||||||||||||  |||||||| ||| || |||   |||||||||||||||||||||||||||||||| |||||    
T  33162958 aatcgtggcatg-tttgtagggaaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacatggca 33162860  T
Q  157 cgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    ||||| | ||||||||||||||| | |||||||| ||| ||||||| |||||||    
T  33162859 cgatgcagacggataaggtatagcattgtactatcacccgctccatcgtggcac 33162806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 34681938 - 34682029
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactat-acctgctccattgtggcacaattgggtcga 219  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||| || |||||||    
T  34681938 cgtgacacgatccaggaggaacgtggcacgatgtagcggataaggtatagtattgtactatcacctgcttcattgtggcacgatggggtcga 34682029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 8040546 - 8040466
Alignment:
Q  140 ccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactat-acctgctccattgtggcacaattgggtcga 219  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||    
T  8040546 ccaggaggaacgtgacacgatgtagcggataaggtatagtactgtactatcacctgctccatcgtggcacgatggggtcga 8040466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 36773188 - 36773291
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||| | |||||||||||||||||||||||||  |||||||| ||| || |||   |||||||||| |||||||||||||||||||||||| ||    
T  36773188 aatcgtggcatg-tttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaattgtggcacgatccaggaggaacgtgaca 36773286  T
Q  157 cgatg 161  Q
    |||||    
T  36773287 cgatg 36773291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 42269862 - 42269781
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    |||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||    
T  42269862 cgtgacacgatccaggaggaacgtggcacgatgtagacagataaggtatagtattgtactatcacctgctccatcgtggcac 42269781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 31056536 - 31056455
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    |||||||||||||||||||||| |||||||||| | || ||||||||||| || |||||||| ||||||||||| |||||||    
T  31056536 cgtggcacgatccaggaggaacatggcacgatgcagacagataaggtataatattgtactatgacctgctccatcgtggcac 31056455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 11066953 - 11067026
Alignment:
Q  80 aacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtg 153  Q
    |||||||||||||||   ||||||| ||| || |||   ||| |||||||||||||||||| ||||||||||||    
T  11066953 aacgtggcacgattgaagggttcagtttttgggttgccactgaaaaaatcgtggcacgatctaggaggaacgtg 11067026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 21800871 - 21801012
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||    
T  21800871 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatcgtggcacg-tttgcagggcaacgtggtacgattggatggttcaggtttgggttt 21800969  T
Q  115 gttgctggaaaaatcgtggcacgatccaggaggaacgtggcac 157  Q
    ||  |||||||||||||||||||||||| ||||||| ||||||    
T  21800970 gtcactggaaaaatcgtggcacgatccaagaggaacatggcac 21801012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 3039465 - 3039361
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagattt-gggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggc 155  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||  ||||||||||||||||||    
T  3039465 aatcgtggcacg-tttgcagggcaacgtggcacgattggatggttcagattttgggtttgtcgctggaaaaatcgtggcaaaatccaggaggaacgtggc 3039367  T
Q  156 acgatg 161  Q
    ||||||    
T  3039366 acgatg 3039361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 11376 - 11231
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||| ||| ||||    
T  11376 tgttgaaaattgactcaagaattggatgttgaagcactgagaaatcgtggcacg-tttgcagggcaacgtggcacgattagatggttcagaattgagttt 11278  T
Q  115 gttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |||||| ||||| | ||||||||||  || |||||||||||||||||    
T  11277 gttgctcgaaaatttgtggcacgatttagaaggaacgtggcacgatg 11231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 11221 - 11131
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactatacctgctccattgtggcacaattgggtcga 219  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  11221 cgtggcacgatccaagagaaacgtggcacgatgtagcggataaggtatagtactgtactatacctactccatcgtggcacgattgggtcga 11131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 47703387 - 47703532
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    ||||| |||||||||||||| |||||||| ||| ||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  47703387 tgttgtaaattgactcaagaattggatgtcgaaacactgagaaatcgtagcac-atttgcagggcaacgtggcacgattggatggttcaaatttgggttt 47703485  T
Q  115 gttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    || ||||||||| |||| ||||||||||| |||||||||||||||||    
T  47703486 gtcgctggaaaattcgtagcacgatccagaaggaacgtggcacgatg 47703532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 40816285 - 40816432
Alignment:
Q  13 attgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcaggg-caacgtggcacgattggttggttcagatttggg 111  Q
    |||||||||||||||||||| | |||||||||||||||||||  |||||||||| | ||||||||| |||| ||| |||||||| |||||||| |||||     
T  40816285 attgttgaaaattgactcaaaaattggatgttgaagcactgaaaaatcgtggcatg-tttgcaggggcaacatggtacgattggatggttcaggtttgg- 40816382  T
Q  112 tttgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |||||   ||||||||||||||||||||||||||||||||||||||||||    
T  40816383 tttgtcattggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 40816432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 47703547 - 47703630
Alignment:
Q  134 cacgatccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactatacctgctccattgtggcacaattgggtc 217  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  47703547 cacgatccaggaggaatgtggtacgatgtagcggataaggtatagtactgtactatacctgctccatcgtggcacgattgggtc 47703630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 19073507 - 19073390
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||||| |||||||||||||||||||  ||| |||||||| |||||| ||||||||||||||||||| |||      |||||||||    
T  19073507 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatggtggcacg-tttgcaaggcaacgtggcacgattggatgg------tttgggttt 19073415  T
Q  115 gttgctggaaaaatcgtggcacgat 139  Q
    ||   ||||||||||||||||||||    
T  19073414 gtcattggaaaaatcgtggcacgat 19073390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 19121397 - 19121280
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggttt 114  Q
    |||||||||||||||||||| |||||||||||||||||||  ||| |||||||| |||||| ||||||||||||||||||| |||      |||||||||    
T  19121397 tgttgaaaattgactcaagaattggatgttgaagcactgaaaaatggtggcacg-tttgcaaggcaacgtggcacgattggatgg------tttgggttt 19121305  T
Q  115 gttgctggaaaaatcgtggcacgat 139  Q
    ||   ||||||||||||||||||||    
T  19121304 gtcattggaaaaatcgtggcacgat 19121280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 28266117 - 28266014
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||| ||||||| |||||||||||||||||||||||||  |||||||||||| || |||   |||||||||||||||||||||||| ||||||| |||||    
T  28266117 aatcatggcacg-tttgcagggcaacgtggcacgattgaatggttcagattttgggttgccactggaaaaatcgtggcacgatccaagaggaacatggca 28266019  T
Q  157 cgatg 161  Q
    |||||    
T  28266018 cgatg 28266014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 47256093 - 47255992
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||||| |||| ||| ||  |||||||||||||||||||||| |||||||  ||||||    
T  47256093 aatcgtggcacg-tttgcagtgcaacgtggcacgattggatggttcaggtttgagtt-gtcactggaaaaatcgtggcacgatctaggaggagtgtggca 47255996  T
Q  157 cgat 160  Q
    ||||    
T  47255995 cgat 47255992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 776950 - 776988
Alignment:
Q  123 aaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  776950 aaaaatcgtggcacgacccaggaggaacgtggcacgatg 776988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 19073400 - 19073340
Alignment:
Q  150 cgtggcacgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    |||||||||||||| |||| |||||||||||| |||||||| ||||||||||| |||||||    
T  19073400 cgtggcacgatgtagacgggtaaggtatagtattgtactatcacctgctccatcgtggcac 19073340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 19121290 - 19121230
Alignment:
Q  150 cgtggcacgatgta-acggataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    |||||||||||||| |||| |||||||||||| |||||||| ||||||||||| |||||||    
T  19121290 cgtggcacgatgtagacgggtaaggtatagtattgtactatcacctgctccatcgtggcac 19121230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 10400338 - 10400299
Alignment:
Q  55 ggaatcgtggcacgatttgcagggcaacgtggcacgattgg 95  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  10400338 ggaatcgtggcacgatt-gctgggcaacgtggcacgattgg 10400299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 45644834 - 45644802
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatg 161  Q
    ||||||||||||||||||||||||||| |||||    
T  45644834 cgtggcacgatccaggaggaacgtggctcgatg 45644802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 24334699 - 24334553
Alignment:
Q  14 ttgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtt 113  Q
    |||||| |||||| ||||||| || ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||||||||||| ||    
T  24334699 ttgttgtaaattgcctcaagaatttgatgttgaagcactgagaaatcgtggcacg-tttgcagggcaacgtgtcacgattggatggttcagatttggatt 24334601  T
Q  114 tgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatg 161  Q
    ||| | ||||||| | |||||||||||||| |||||||||||||||||    
T  24334600 tgtcgttggaaaatttgtggcacgatccagaaggaacgtggcacgatg 24334553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 46147846 - 46147733
Alignment:
Q  97 tggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat-acctg 194  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| |||||    
T  46147846 tggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcagacgaataaggtatagtactgtactatcacctg 46147747  T
Q  195 ctccattgtggcac 208  Q
    |||||  |||||||    
T  46147746 ctccaacgtggcac 46147733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 24334543 - 24334464
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgtaacggataaggtatagtactgtactatacctgctccattgtggcac 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  24334543 cgtggcacgatccaggaggaacgtggcacgatgtagcggataaggtatagtaatgtactatacctgctccatcgtggcac 24334464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 36463931 - 36463780
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| |||||||||||||||| ||||||||  |||||||| ||| || |||    || ||||||||||||||||| ||||||||||||||||    
T  36463931 aatcgtggcacg-tttgcagggcaacgtgacacgattgaatggttcagtttttgggttgccattgaaaaaatcgtggcacgatgcaggaggaacgtggca 36463833  T
Q  157 cgatgta-acggataaggtatagtactgtactat-acctgctccattgtggca 207  Q
    ||| | | ||| ||||||||||||| |||||||| ||||||||||| ||||||    
T  36463832 cgaagcagacgaataaggtatagtattgtactatcacctgctccatcgtggca 36463780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 3793593 - 3793697
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagat-ttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggc 155  Q
    |||||||||||| ||||||||| ||| ||| |||||||| |||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |||     
T  3793593 aatcgtggcacg-tttgcagggaaacatggtacgattggatggttcagatattgggtttttcgctggaaaaatcgtggcacgatccaggaggaacatgga 3793691  T
Q  156 acgatg 161  Q
    ||||||    
T  3793692 acgatg 3793697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 45687725 - 45687622
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcagatttgggtttgttgctggaaaaatcgtggcacgatccaggaggaacgtggca 156  Q
    |||||||||||| ||||||||||||||||| |||||||  |||||||| ||| || |||   |||||||| |||||||||||||||||||||||||| ||    
T  45687725 aatcgtggcacg-tttgcagggcaacgtggtacgattgaatggttcagtttttgggttgccactggaaaagtcgtggcacgatccaggaggaacgtgaca 45687627  T
Q  157 cgatg 161  Q
    |||||    
T  45687626 cgatg 45687622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 3793724 - 3793777
Alignment:
Q  166 ggataaggtatagtactgtactatacctgctccattgtggcacaattgggtcga 219  Q
    ||||||||||||||| |||||||||| |||||||| |||| || ||||||||||    
T  3793724 ggataaggtatagtattgtactatacatgctccatcgtggtacgattgggtcga 3793777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 52467863 - 52467817
Alignment:
Q  57 aatcgtggcacgatttgcagggcaacgtggcacgattggttggttcag 104  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||    
T  52467863 aatcgtggcacg-tttgcagggcaacgtggcacgattgaatggttcag 52467817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 52467774 - 52467732
Alignment:
Q  167 gataaggtatagtactgtactat-acctgctccattgtggcac 208  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  52467774 gataaggtatagtactgtactatcacctgctccatcgtggcac 52467732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 3792486 - 3792523
Alignment:
Q  15 tgttgaaaattgactcaagacttggatgttgaagcact 52  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  3792486 tgttgaaaattaactcaagaattggatgttgaagcact 3792523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 5404 - 5552
Alignment:
Q  14 ttgttgaaaattgactcaagacttggatgttgaagcactgaggaatcgtggcacgatttgcagggcaacgtggcacgattggttggttcaga-tttgggt 112  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||| || |||| |||||||||||||||||||||||| | ||||||||| |||||||    
T  5404 ttgttgaaaattgactcaagaattggatgttgaagcactgagaaatcatgacacg-tttgcagggcaacgtggcacgattagatggttcagattttgggt 5502  T
Q  113 ttgttgctggaaaaat-cgtggcacgatccaggaggaacgtggcacgatg 161  Q
    |||| ||||||||||| ||||||||||| ||| | |||||||||||||||    
T  5503 ttgtcgctggaaaaatacgtggcacgatgcagaaagaacgtggcacgatg 5552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 5562 - 5623
Alignment:
Q  129 cgtggcacgatccaggaggaacgtggcacgatgta-acggataaggtatagtactgtactat 189  Q
    ||||||||||||||||||||| ||| ||| ||| | |||||||||||||| || ||||||||    
T  5562 cgtggcacgatccaggaggaatgtgtcacaatgcagacggataaggtatattattgtactat 5623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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