View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_8 (Length: 478)
Name: NF2097_low_8
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 6861836 - 6862295
Alignment:
| Q |
1 |
tgtaggttatgcgtaattccttagtaaatccatagtgaagttggtgattctcgttaactttacatggatgtgcctctcctaatctaaannnnnnnctnnn |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6861836 |
tgtaggttatgcgtaattccttagtaaatccatagcgaagttggtgattctcgttaactttacatggatgtgcctctcctaatctaaatttttttctata |
6861935 |
T |
|
| Q |
101 |
nnnnnnggttacatttgtattcttgtatatgtctaatttattttcaaatgaatcatcaatttagtttctaaaattgtaagatactccaaatttaatccca |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6861936 |
aaaaaaggttacatttgtattcttgtatatgtctaatatattttcaaatgaatcatcaatttagtttctaaaattgtaagatactccaaatttaatccca |
6862035 |
T |
|
| Q |
201 |
taaattaataatattacaaactactagtccttggtattgaaaaccgctgattatattagttcttttactgatatttgattgagaattttcaaattcataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6862036 |
taaattaataatattacaaactactagtccttggtattgaaaaccgttgattatattagttcttttactgatatttgattgagaattttcaaattcataa |
6862135 |
T |
|
| Q |
301 |
atcattttaaaatttcgttaacttgagagactaagtcggcatcgtgcaacaacactcttcattttcctaccaagttgaaagaaatactactgattaaaca |
400 |
Q |
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| T |
6862136 |
atcattttaaaatttcgttaacttgagagactaagtcggcatcatgcaacaacactcttcattttcctaccaagttgaaagaaatactactgattaaaca |
6862235 |
T |
|
| Q |
401 |
tactcttattgctattatggtatacaattttatatcaggttaatttggcttgtcgatctg |
460 |
Q |
| |
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| T |
6862236 |
tactcttattgctattatggtatacaattttatatcaggttaatttggcttgtcgatctg |
6862295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 454
Target Start/End: Original strand, 27632630 - 27632744
Alignment:
| Q |
340 |
catcgtgcaacaacactcttcattttcctaccaagttgaaagaaatactactgattaaacatactcttattgctattatggtatacaattttatatcagg |
439 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| || | |||||| | |||| |
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| T |
27632630 |
catcgtgcaacaatactctttattttcctaccatgttgaaagaaatactactgtttaaacatactcttatataaattatgctacataattttgtggcagg |
27632729 |
T |
|
| Q |
440 |
ttaatttggcttgtc |
454 |
Q |
| |
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||||| ||||||||| |
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| T |
27632730 |
ttaatctggcttgtc |
27632744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 21538733 - 21538782
Alignment:
| Q |
275 |
ttgattgagaattttcaaattcataaatcattttaaaatttcgttaactt |
324 |
Q |
| |
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| T |
21538733 |
ttgattgagaattttcaaattcatagatcattttgaaattttgttaactt |
21538782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 20638184 - 20638135
Alignment:
| Q |
275 |
ttgattgagaattttcaaattcataaatcattttaaaatttcgttaactt |
324 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| |||||||| |
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|
| T |
20638184 |
ttgattgagaattttcaaattcatagatcattttgaaattttgttaactt |
20638135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 10141692 - 10141652
Alignment:
| Q |
279 |
ttgagaattttcaaattcataaatcattttaaaatttcgtta |
320 |
Q |
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| T |
10141692 |
ttgagaattttcaaattcacaaatcatttt-aaatttcgtta |
10141652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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