View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2097_low_82 (Length: 206)
Name: NF2097_low_82
Description: NF2097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2097_low_82 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 30761925 - 30761821
Alignment:
| Q |
12 |
cataggaggaggaagaaagagattagagacaaccttaataagtcttaactgttgtttttctattaagatttcgtaaccctaagagaattgattgaaaacc |
111 |
Q |
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| T |
30761925 |
cataggaggaggaagaaagagattagagacaaccttaataagtcttaactgttgtttttctattaagatttcgtaaccctaagagaattgattgaaaacc |
30761826 |
T |
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| Q |
112 |
ttaat |
116 |
Q |
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||||| |
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| T |
30761825 |
ttaat |
30761821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 30761703 - 30761625
Alignment:
| Q |
113 |
taatcttcaacagctaagcattgtatccttgccttgcttctggtttatccgagaacataaactaaatggggtgagacat |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30761703 |
taatcttcaacagctaagcattgtatccttgccttgcttcgcgtttatccgagaacataaactaaatggggtgagacat |
30761625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 30751451 - 30751348
Alignment:
| Q |
12 |
cataggaggaggaagaaagagattagagacaaccttaataagtcttaactgttgtttttctattaagatttcgtaaccctaagagaattgattgaaaacc |
111 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||| || |||||||| ||||||||||| |||| ||||||||||||||||||| ||| |
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| T |
30751451 |
cataggaggaggaagtaagagactagagacaaccttaataagtcctactaattgtttttttattaagattttgtaa-cctaagagaattgattgaatacc |
30751353 |
T |
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| Q |
112 |
ttaat |
116 |
Q |
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||||| |
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| T |
30751352 |
ttaat |
30751348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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