View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_high_12 (Length: 374)
Name: NF20980_high_12
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_high_12 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 224 - 374
Target Start/End: Original strand, 35922561 - 35922711
Alignment:
| Q |
224 |
tacacaacatagttacctgacaaatgagcatttgaagaccaccttcaagaaaaagggctctcctacccaatctatcaactccaaaaattgagataatggt |
323 |
Q |
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| T |
35922561 |
tacacaacatagttacctgacaaatgagcatttgaaggccaccttcaagaaaaagggctctcctacccaatctatcaactccaaaaattgagataatggt |
35922660 |
T |
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| Q |
324 |
accaaaagcattaacaacgccagttatcacagatgacataagggcagcatc |
374 |
Q |
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| T |
35922661 |
accaaaagcattaacaacgccagttatcacagatgacataagggcagcatc |
35922711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 35922339 - 35922485
Alignment:
| Q |
10 |
aagaatatgctgctacataagcgcaaatgaatagcaccacaacaattgcataccactttggtaactcaccagggtttccatcaattccaaatttggctcc |
109 |
Q |
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| T |
35922339 |
aagaaaatgctgctacataagcgcaaatgaatagcaccacaacaattgcataccactttggtaactcaccagggtttccatcaattccaaatttggctcc |
35922438 |
T |
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| Q |
110 |
aatagatgcagcaactccaatctttgcacatcaacaaatatagttgg |
156 |
Q |
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| T |
35922439 |
aatagatgcagcaactccaatctttgcacatcaacaaatatagttgg |
35922485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 36202486 - 36202405
Alignment:
| Q |
235 |
gttacctgacaaatgagcatttgaagaccaccttcaagaaaaagggctctcctacccaatctatcaactccaaaaattgaga |
316 |
Q |
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|||||||| || |||||||||||| |||||||||||| |||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
36202486 |
gttacctggcatatgagcatttgagcaccaccttcaaggaaaagggctctcctaccccacttatcaactccataaattgaga |
36202405 |
T |
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