View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20980_high_15 (Length: 326)

Name: NF20980_high_15
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20980_high_15
NF20980_high_15
[»] chr4 (7 HSPs)
chr4 (16-314)||(55908284-55908582)
chr4 (15-117)||(12118865-12118967)
chr4 (70-275)||(547197-547402)
chr4 (69-146)||(1600814-1600891)
chr4 (15-117)||(1527758-1527860)
chr4 (68-189)||(3438260-3438381)
chr4 (70-111)||(53761398-53761439)
[»] chr2 (2 HSPs)
chr2 (16-314)||(1037220-1037518)
chr2 (211-286)||(32785526-32785601)
[»] scaffold0262 (1 HSPs)
scaffold0262 (16-200)||(276-460)
[»] scaffold0295 (1 HSPs)
scaffold0295 (193-314)||(354-475)
[»] chr1 (6 HSPs)
chr1 (16-189)||(19468064-19468237)
chr1 (49-196)||(29658545-29658692)
chr1 (49-196)||(29691060-29691207)
chr1 (49-196)||(29718572-29718719)
chr1 (47-189)||(33160874-33161016)
chr1 (69-110)||(52093223-52093264)
[»] chr6 (6 HSPs)
chr6 (67-196)||(7993792-7993921)
chr6 (73-195)||(6596562-6596684)
chr6 (68-111)||(8913680-8913723)
chr6 (72-111)||(6432596-6432635)
chr6 (73-117)||(6602821-6602865)
chr6 (67-195)||(7131978-7132106)
[»] chr7 (2 HSPs)
chr7 (47-189)||(10169726-10169868)
chr7 (47-189)||(10177251-10177393)
[»] chr8 (2 HSPs)
chr8 (67-286)||(17627666-17627885)
chr8 (200-275)||(17636137-17636212)
[»] chr5 (3 HSPs)
chr5 (51-182)||(38267147-38267278)
chr5 (51-107)||(37938351-37938407)
chr5 (163-246)||(32267785-32267868)
[»] chr3 (2 HSPs)
chr3 (70-112)||(51764059-51764101)
chr3 (79-107)||(33396948-33396976)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 55908284 - 55908582
Alignment:
Q  16 caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908284 caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaat 55908383  T
Q  116 gtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgt 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55908384 gtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaagtttgggggaaaagagtgt 55908483  T
Q  216 agataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatatt 314  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908484 agataattctaatttttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatatt 55908582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 12118865 - 12118967
Alignment:
Q  15 tcaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaa 114  Q
    |||| ||||||||||||||||||| | |||||||||||||    |||||   ||||||||||||||||||||||||||| ||||||||||| ||||| ||    
T  12118865 tcaatatttggatcttcaaaatgctaagtttatgaatgattggaatgtcattgagttgtctttgtttcttggtgatttgttgtctataaacattagtaaa 12118964  T
Q  115 tgt 117  Q
    |||    
T  12118965 tgt 12118967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 275
Target Start/End: Complemental strand, 547402 - 547197
Alignment:
Q  70 ttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcac 169  Q
    ||||||||||||||||||||||||| || ||||||||||||| | ||| |    |||||| | |  ||| ||||||| |||||||| |||||| ||||||    
T  547402 ttgtctttgtttcttggtgatttggagtttataaaccttagtcagtgtgggcaactcacaaatttagccttgtttgcactcgttagtaattgtgcttcac 547303  T
Q  170 ttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcact 269  Q
    ||| |||  |||||||||||| |||||   | |||    |||||||||| |||||||||||||  | ||||| |||| ||| || |||||| ||||| ||    
T  547302 ttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttcaaggattttgttgtaagccctcaattgaagtctct 547203  T
Q  270 ccattt 275  Q
    ||||||    
T  547202 ccattt 547197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 1600891 - 1600814
Alignment:
Q  69 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgc 146  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||    
T  1600891 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgc 1600814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 1527758 - 1527860
Alignment:
Q  15 tcaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaa 114  Q
    |||| ||||||||||||||||| ||| |||||||||||||    |||||   |||||||||| ||||||| |||||||| ||||||||||| ||||| ||    
T  1527758 tcaatatttggatcttcaaaattccaagtttatgaatgatttgcatgtcattgagttgtcttcgtttcttagtgatttgttgtctataaacattagtaaa 1527857  T
Q  115 tgt 117  Q
    |||    
T  1527858 tgt 1527860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 3438260 - 3438381
Alignment:
Q  68 agttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttc 167  Q
    |||||||  |||||| |||||||||||||||||||||||||||||| |||   ||||||||| | |  ||| | ||| | ||| |||| |||||||||||    
T  3438260 agttgtccatgtttcatggtgatttggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactcattagtaattgtccttc 3438359  T
Q  168 acttattgacgtcaaaatggaa 189  Q
    ||||| |||  | |||||||||    
T  3438360 acttagtgagataaaaatggaa 3438381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 53761398 - 53761439
Alignment:
Q  70 ttgtctttgtttcttggtgatttggtgtctataaaccttagt 111  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  53761398 ttgtctttgcttcttggtgatttggtgtccataaaccttagt 53761439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 1037220 - 1037518
Alignment:
Q  16 caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037220 caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaat 1037319  T
Q  116 gtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgt 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1037320 gtagcatgctcacagactcggccatgtttgcactcgttaggaattgtccttcacttattgaggtcaaaatggaacacacaagtttgggggaaaagagtgt 1037419  T
Q  216 agataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagttactaaatgaaaacatcatatt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1037420 agataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttaacttgcaattttcagttactaaatgaaaacatcatatt 1037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 32785526 - 32785601
Alignment:
Q  211 agtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaatt 286  Q
    |||||| | ||||||||||||| |||||||| |||| ||| || |||||||||||  |||||||| ||| ||||||    
T  32785526 agtgtacaaaattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaatt 32785601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 460 - 276
Alignment:
Q  16 caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaat 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  460 caacatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttggcgatttggtgtctataaatcttagtgaat 361  T
Q  116 gtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaagttt 200  Q
    |||||||||||||| ||||  |||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  360 gtagcatgctcacatactcaaccatgtttgcactcgttaggaattatccttcacttattgagatcaaaatggaacacacaagttt 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 193 - 314
Target Start/End: Original strand, 354 - 475
Alignment:
Q  193 acaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccatttagcttgcaattttcagt 292  Q
    ||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  354 acaagtttggggggaaagtgcgtagataattctaattcttcaatggattgtgttttaaaccatcaattaaagtcacttcatttagcttgcaattttcagt 453  T
Q  293 tactaaatgaaaacatcatatt 314  Q
    ||||||||||||||||||||||    
T  454 tactaaatgaaaacatcatatt 475  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 19468064 - 19468237
Alignment:
Q  16 caacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaat 115  Q
    ||||||||||||||||||  |||   |||| ||||||||||| |||| |   ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19468064 caacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgatttagtgtctataaaccttagtgaat 19468163  T
Q  116 gtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcacttattgacgtcaaaatggaa 189  Q
    |||     |||||| | ||  || ||||| | ||||||||||||||||||||||||| |||  |||||||||||    
T  19468164 gtatggacctcacatattcaaccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaa 19468237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 29658545 - 29658692
Alignment:
Q  49 aatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccc 148  Q
    ||||||||  |||| || ||||| ||||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||  ||||| | |    
T  29658545 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgc 29658644  T
Q  149 tcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaa 196  Q
    ||||||  |||||||||||||||| |||| ||||||||||| ||||||    
T  29658645 tcgttataaattgtccttcacttagtgacatcaaaatggaatacacaa 29658692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 29691060 - 29691207
Alignment:
Q  49 aatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccc 148  Q
    ||||||||  |||| || ||||| ||||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||  ||||| | |    
T  29691060 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgc 29691159  T
Q  149 tcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaa 196  Q
    ||||||  |||||||||||||||| |||| ||||||||||| ||||||    
T  29691160 tcgttataaattgtccttcacttagtgacatcaaaatggaatacacaa 29691207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 29718572 - 29718719
Alignment:
Q  49 aatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccc 148  Q
    ||||||||  |||| || ||||| ||||||||||||| | ||||||||||||||||||||| || |||| | | ||| ||||| || ||  ||||| | |    
T  29718572 aatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaaccttactggatgttggaagctgacagaatcagctttgttttcgc 29718671  T
Q  149 tcgttaggaattgtccttcacttattgacgtcaaaatggaacacacaa 196  Q
    ||||||  |||||||||||||||| |||| ||||||||||| ||||||    
T  29718672 tcgttataaattgtccttcacttagtgacatcaaaatggaatacacaa 29718719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 33161016 - 33160874
Alignment:
Q  47 tgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgc 146  Q
    ||||||||||  |||| || ||||| ||||||||||||| || |||||||||||||||||||| || |||| | | ||||||||| || ||  ||||| |    
T  33161016 tgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcattgttttc 33160917  T
Q  147 cctcgttaggaattgtccttcacttattgacgtcaaaatggaa 189  Q
     || ||||  || ||||||||||||| |||| |||||||||||    
T  33160916 acttgttacaaactgtccttcacttagtgacatcaaaatggaa 33160874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 52093264 - 52093223
Alignment:
Q  69 gttgtctttgtttcttggtgatttggtgtctataaaccttag 110  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  52093264 gttgtctttggttcttggtaatttggtgtctataaaccttag 52093223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 7993792 - 7993921
Alignment:
Q  67 gagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtcctt 166  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||| | |||||||| || ||||| |    
T  7993792 gagttgtcattacttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactcgttagaaactgtccat 7993891  T
Q  167 cacttattgacgtcaaaatggaacacacaa 196  Q
    |||||  |||  |||||||||||| |||||    
T  7993892 cacttcgtgaaatcaaaatggaacgcacaa 7993921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 195
Target Start/End: Original strand, 6596562 - 6596684
Alignment:
Q  73 tctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtccttcactta 172  Q
    ||||||||||||||||||||||| ||||||||||||| | | |||   | ||||||||| || ||| ||||| ||||||| || ||||||||||| ||||    
T  6596562 tctttgtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttttccctcgtaagaaattgtccttcgctta 6596661  T
Q  173 ttgacgtcaaaatggaacacaca 195  Q
     |||  |||||||| || |||||    
T  6596662 gtgagatcaaaatgcaaaacaca 6596684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 8913680 - 8913723
Alignment:
Q  68 agttgtctttgtttcttggtgatttggtgtctataaaccttagt 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  8913680 agttgtctttgtttcttggtaatttggtgtctataaaccttagt 8913723  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 6432635 - 6432596
Alignment:
Q  72 gtctttgtttcttggtgatttggtgtctataaaccttagt 111  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  6432635 gtctttgtttcttgctgatttggtgtctataaaccttagt 6432596  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 6602821 - 6602865
Alignment:
Q  73 tctttgtttcttggtgatttggtgtctataaaccttagtgaatgt 117  Q
    ||||||||||||  | |||||||||||||||||||||||||||||    
T  6602821 tctttgtttcttactaatttggtgtctataaaccttagtgaatgt 6602865  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 7132106 - 7131978
Alignment:
Q  67 gagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtcctt 166  Q
    |||||||||| ||||||| |||| ||  ||||| |||||||| |||| ||| | ||||||||||| |  ||| ||| | | |||||||| || || ||||    
T  7132106 gagttgtcttggtttcttcgtgacttactgtctgtaaaccttcgtgactgttggatgctcacagaattagccttgtattcactcgttagaaactgccctt 7132007  T
Q  167 cacttattgacgtcaaaatggaacacaca 195  Q
    |||||| |||  ||||||||||| |||||    
T  7132006 cacttagtgagttcaaaatggaatacaca 7131978  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 10169726 - 10169868
Alignment:
Q  47 tgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgc 146  Q
    ||||||||||| |||| |  ||||| ||||||||| |||||||||| |||||| ||||||||||| |||||     | ||||| | ||  || |||||||    
T  10169726 tgaatgatcactatgttgatgagttttctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgc 10169825  T
Q  147 cctcgttaggaattgtccttcacttattgacgtcaaaatggaa 189  Q
     ||||||||||||||||||||||||| |||  |||||||||||    
T  10169826 actcgttaggaattgtccttcacttagtgagatcaaaatggaa 10169868  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 189
Target Start/End: Original strand, 10177251 - 10177393
Alignment:
Q  47 tgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgc 146  Q
    ||||||||||| |||| |  ||||| ||||||||| |||||||||| |||||| ||||||||||| |||||     | ||||| | ||  || |||||||    
T  10177251 tgaatgatcactatgttgatgagttttctttgtttattggtgatttagtgtctgtaaaccttagtcaatgtttggagatcacatattcatccttgtttgc 10177350  T
Q  147 cctcgttaggaattgtccttcacttattgacgtcaaaatggaa 189  Q
     ||||||||||||||||||||||||| |||  |||||||||||    
T  10177351 actcgttaggaattgtccttcacttagtgagatcaaaatggaa 10177393  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 286
Target Start/End: Original strand, 17627666 - 17627885
Alignment:
Q  67 gagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctcgttaggaattgtcctt 166  Q
    ||||||||||  ||||||||| ||||||||||| ||||||||||| | ||| | ||||||   || || ||| ||||| | |||||||| || |||||||    
T  17627666 gagttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtcctt 17627765  T
Q  167 cacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtc 266  Q
    |||||| |||  | |||||||||  ||||  | | |||||| ||||| || | ||||||||||||| | ||||||  ||| ||| || ||||||||| ||    
T  17627766 cacttaatgagataaaaatggaatgcacatctattggggaagagagtctaaagaattctaattctttggtggatttcgttgtaagccctcaattaaaatc 17627865  T
Q  267 actccatttagcttgcaatt 286  Q
     ||| |||| |||| |||||    
T  17627866 tctctatttggctttcaatt 17627885  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 17636137 - 17636212
Alignment:
Q  200 tgggggaaaagagtgtagataattctaattcttcgatggattgtgttttaaaccatcaattaaagtcactccattt 275  Q
    |||||||||| | |||||| |||||||||||||||||| ||| |||| |||||| |||||| ||||| ||||||||    
T  17636137 tgggggaaaataatgtagagaattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccattt 17636212  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 38267147 - 38267278
Alignment:
Q  51 tgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgccctc 150  Q
    ||||||| |||| || ||||||||||||||||||  | || |||||||||||||||||||| | ||||  |  ||| || | || ||  | ||||| |||    
T  38267147 tgatcaccatgttgccgagttgtctttgtttcttcctcatctggtgtctataaaccttagttattgtactaacctctcatattctgctttttttgcactc 38267246  T
Q  151 gttaggaattgtccttcacttattgacgtcaa 182  Q
    |||||||| ||||||||||||| ||| |||||    
T  38267247 gttaggaactgtccttcacttagtgaggtcaa 38267278  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 37938407 - 37938351
Alignment:
Q  51 tgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacct 107  Q
    ||||||| ||||||| ||||||||||||||||||  |||||| ||||| ||||||||    
T  37938407 tgatcaccatgtcgctgagttgtctttgtttcttcctgatttagtgtcaataaacct 37938351  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 32267868 - 32267785
Alignment:
Q  163 ccttcacttattgacgtcaaaatggaacacacaagtttgggggaaaagagtgtagataattctaattcttcgatggattgtgtt 246  Q
    |||||||||| |||  ||||||||||||||||| || | ||| |||||||| |||| | |||||| |||| |||||||| ||||    
T  32267868 ccttcacttagtgagatcaaaatggaacacacatgtattgggaaaaagagtctagagagttctaaatctttgatggattttgtt 32267785  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 51764059 - 51764101
Alignment:
Q  70 ttgtctttgtttcttggtgatttggtgtctataaaccttagtg 112  Q
    ||||||||||||||| || |||||||||| |||||||||||||    
T  51764059 ttgtctttgtttcttagtaatttggtgtccataaaccttagtg 51764101  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 33396976 - 33396948
Alignment:
Q  79 tttcttggtgatttggtgtctataaacct 107  Q
    |||||||||||||||||||||||||||||    
T  33396976 tttcttggtgatttggtgtctataaacct 33396948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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