View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20980_high_2 (Length: 522)
Name: NF20980_high_2
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 39472485 - 39471995
Alignment:
| Q |
19 |
cttatgaggtttgttatggatattctctaaaatccaaattgccaagtgttagctgctgatgcttgagnnnnnnnttaaataaaacatatttgtgtcattg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39472485 |
cttatgaggtttgttatggatattctctaaaatccaaattgc-aagtgttagctgctgatgcttgagaaaaaaattaaataaaacatatttgtgtcattg |
39472387 |
T |
|
| Q |
119 |
tacaattgttattgaatattttttaattttatatcctattttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgtttcacatctg |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39472386 |
tacaattgttattgaatatttttgaattttatatcctattttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgtttcacatctg |
39472287 |
T |
|
| Q |
219 |
ttttcttaattgatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttgtattatggataatga |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39472286 |
ttttcttaattgatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttgtattatggataatga |
39472187 |
T |
|
| Q |
319 |
attcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtatttcatgttttctgtgatgcgagtctctttttgaatt |
418 |
Q |
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| T |
39472186 |
attcttaagtggtacattgagttgaacacaagtggagccaaattggaaaatatagctaatgtatttcatgttttctgtgatgcgagtctctttttgaatt |
39472087 |
T |
|
| Q |
419 |
ta--ttgtataatagtgttataagattctggttcatgtttctgccattttctcatgtttctatctatatctatctattgtaattttcctgcc |
508 |
Q |
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|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39472086 |
tattttgtataatagtgttataaggttctggttcatgtttctgccattttctcatgtttctatctatatctatctattgtaattttcctgcc |
39471995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 145 - 473
Target Start/End: Original strand, 39453265 - 39453594
Alignment:
| Q |
145 |
ttttatatcctattttgagaatgtggaatcttagaaccgtgtttgaa-----atatggtttgcaagtgtttcacatctgttttcttaatt-gatgtctgg |
238 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| |||||| || |||||||||||||||||||| ||||||||||||||||| | |||||| |
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| T |
39453265 |
ttttatatcctattttgagaatgtgtaatagtagaattgtgtttcaattcaaatatggtttgcaagtgtttctcatctgttttcttaatttggtgtctgc |
39453364 |
T |
|
| Q |
239 |
ttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattga |
338 |
Q |
| |
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||||||||| || |||||||||||||| || |||| | |||||||||||||||||||| |||| ||||| ||| | |||||||||||||||||||| |
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| T |
39453365 |
ttctttggagtaacttggaaccgttaaatgtgtctcattgctcctggaatgtccttgtagagttggattatcgatta---attcttaagtggtacattga |
39453461 |
T |
|
| Q |
339 |
gttgaacacaagcggagccaaattggaaaatatagctaatgtatttcatgttttctgtgatgcgagtctctttttgaatttat---tgtataatagtgtt |
435 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||||| ||| |||||||||| |
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| T |
39453462 |
attgatcacaagttgagccaaattggaaaatatagctaatgtatttcaagttttctgt-----gaaactcgttttgaatttatttgtgtttaatagtgtt |
39453556 |
T |
|
| Q |
436 |
ataagattctggttcatgtttctgccattttctcatgt |
473 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
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| T |
39453557 |
ataagattctggttcatatttctgttattttctcatgt |
39453594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 109 - 398
Target Start/End: Complemental strand, 39412780 - 39412489
Alignment:
| Q |
109 |
tgtgtcattgtacaattgttattgaatattttttaattttatatcctattttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgt |
208 |
Q |
| |
|
||||| |||||||| |||| ||||||| ||| ||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
39412780 |
tgtgtgattgtacagatgtttttgaataggtttgaatttgatatcctactttgagaatgctgaatcttagaaccgtgtttcaaatatggtttgcaagttt |
39412681 |
T |
|
| Q |
209 |
ttcacatctgttttc-ttaattgatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatg-tccttgtagtgttgtat |
306 |
Q |
| |
|
||||||| ||||||| ||| ||| ||| |||||||||||||||| ||||||| ||||| || ||| | || ||||||| | |||||| ||||||| |
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|
| T |
39412680 |
ttcacatttgttttctttatttggtgtttggttctttggatgaacttggaaccattaaacatttatcattgcttttggaatgttttttgtagagttgtat |
39412581 |
T |
|
| Q |
307 |
tatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtatttcatgttttctgtga |
398 |
Q |
| |
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||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||| |
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| T |
39412580 |
tatggataatgaattattaagtggtacatcgaattgaacacaagtggagccaaattggtaaatatagctaatacatttcaagttttctgtga |
39412489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 205 - 382
Target Start/End: Original strand, 39139285 - 39139462
Alignment:
| Q |
205 |
gtgtttcacatctgttttcttaatt-gatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttg |
303 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| | |||| ||| | ||||||||| |||| || |||||| |
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| T |
39139285 |
gtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatggaaccgttgagtatgtctcgttgctcctggaacgtccatgcagtgtta |
39139384 |
T |
|
| Q |
304 |
tattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtat |
382 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
39139385 |
tattatggataatgaattc-taagtggtacatcgagttgaacacaaatggagccaagttggaaaatatagctaatgtat |
39139462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 97 - 372
Target Start/End: Original strand, 39153565 - 39153841
Alignment:
| Q |
97 |
ataaaacatatttgtgtcattgtacaattgttattgaatattttttaattttatatcctattttgagaatgtggaatcttagaaccgtgtttgaaatatg |
196 |
Q |
| |
|
||||||||||||||||| | |||| | |||| ||||||| || ||||| |||| ||||||||||||| | ||||||||||| | ||||| ||||||| |
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|
| T |
39153565 |
ataaaacatatttgtgtgaacgtacgaatgttcttgaatacgttcaaatttaatattctattttgagaattttgaatcttagaaacatgtttcaaatatg |
39153664 |
T |
|
| Q |
197 |
gtttgcaagtgtttcacatctgttttcttaa-ttgatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttg |
295 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||| | ||||||| |||||||||| |||| || || ||| || |||| | ||||||||||| ||||| |
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|
| T |
39153665 |
gtttacaagtgtttcacattcgttttcttaagttggtatctggttatttggatgaacttggagccatttaatgtgtctcattgctcctggaatgcccttg |
39153764 |
T |
|
| Q |
296 |
tagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatata |
372 |
Q |
| |
|
||| | | || |||||| ||||||||||||| ||| |||||| ||||||||||| ||||||||| ||||||||||| |
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| T |
39153765 |
tagaggttgataatggattatgaattcttaagcggtgcattgaattgaacacaagtggagccaaaatggaaaatata |
39153841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 39420965 - 39420852
Alignment:
| Q |
284 |
ggaatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtatt |
383 |
Q |
| |
|
||||||||||||||| |||| ||||| ||| ||||||||||| |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
39420965 |
ggaatgtccttgtagagttggattatcgattatgaattcttacgtggtacattgaattga--acaagtggagccaaaatggaaaatatagctaatgtatc |
39420868 |
T |
|
| Q |
384 |
tcatgt-tttctgtga |
398 |
Q |
| |
|
||| || ||||||||| |
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|
| T |
39420867 |
tcaagtctttctgtga |
39420852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 39139245 - 39139290
Alignment:
| Q |
143 |
aattttatatcctattttgagaatgtggaatcttagaaccgtgttt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
39139245 |
aattttatatcctattttgagaatgtggactcttagaaccgtgttt |
39139290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 39421081 - 39421029
Alignment:
| Q |
158 |
tttgagaatgtggaatcttagaaccgtgtttgaaatatggtttgcaagtgttt |
210 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| ||||||||||||||| ||||| |
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|
| T |
39421081 |
tttgataatgttgaatcttagaaccatgtttcaaatatggtttgcaaatgttt |
39421029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 473
Target Start/End: Original strand, 39153865 - 39153936
Alignment:
| Q |
405 |
tctctttttgaatttatt---gtataatagtgttataagattctggttcatgtttctgccattttctcatgt |
473 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||||||||||| ||||| |||| ||||||| |
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|
| T |
39153865 |
tctccttttgaatttattttggtataatggtgttataagattctggttcatacttctgttatttcctcatgt |
39153936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 205 - 382
Target Start/End: Original strand, 19809541 - 19809718
Alignment:
| Q |
205 |
gtgtttcacatctgttttcttaatt-gatgtctggttctttggatgaatatggaaccgttaaatatgactcagttctcctggaatgtccttgtagtgttg |
303 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| | |||| |||| | |||||||||||||| |||||||||| |
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|
| T |
19809541 |
gtgtttcacatctgttttcttaatttggtgtctggttctttggatgaacatggaaccgttgagtatgtctcattgctcctggaatgtccatgtagtgttg |
19809640 |
T |
|
| Q |
304 |
tattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaaaatatagctaatgtat |
382 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
19809641 |
tattatggataatgaattc-taagtggtacatcgagttgaacacaaatggagccaaattggaaaatatagctaatgtat |
19809718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 19809459 - 19809546
Alignment:
| Q |
101 |
aacatatttgtgtcattgtacaattgttattgaatattttttaattttatatcctattttgagaatgtggaatcttagaaccgtgttt |
188 |
Q |
| |
|
||||||||||||| ||| ||||| |||| |||| | || |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
19809459 |
aacatatttgtgtgattatacaaatgttcttgatgaggttcaaattttatatcctaatttgagaatgtggaatcttagaaccgtgttt |
19809546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 29485756 - 29485677
Alignment:
| Q |
286 |
aatgtccttgtagtgttgtattatggataatgaattcttaagtggtacattgagttgaacacaagcggagccaaattggaa |
366 |
Q |
| |
|
||||| ||||||| |||| | ||||||| | || |||||||||| ||| |||||||||||||||| ||||||||| ||||| |
|
|
| T |
29485756 |
aatgtacttgtagagttggagtatggattaagagttcttaagtg-tacgttgagttgaacacaagtggagccaaaatggaa |
29485677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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