View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_high_3 (Length: 464)
Name: NF20980_high_3
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 452
Target Start/End: Complemental strand, 24731753 - 24731326
Alignment:
| Q |
25 |
gtacctcattaggagagaaggtaaacgtcactcgcaggtaagggtccgacgaagctgctggaacaactgtctgagtgagcaaggatttcccagatttcca |
124 |
Q |
| |
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|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||| |
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| T |
24731753 |
gtacctcattaggagaaaaggtaaatgtcactcgtaggtaagggtccgatgaagcagccggaacaactgtctgagtgagcaaaattttcccagatttcca |
24731654 |
T |
|
| Q |
125 |
attaaatgagcttgatatatactgaatgatgtatagactaggattattcccttcttcttcaaaatatatagaatctcccagctttgagaatgattcaatt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24731653 |
attaaatgagcttgatatatactgaatgatgtatagactaggattatgcccttcttcttcaaaatatatagaatctcccagctttgagaatgattcaatt |
24731554 |
T |
|
| Q |
225 |
cctaatgaaaaaggaaaaataaatgaaaagcataatactggtaacagaataaatgagtttataaagaataatactccctccgtctcatattattaagtgt |
324 |
Q |
| |
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|||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| || ||||||| |
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| T |
24731553 |
cctaatgacaaaggaaaaataaataaagagcataatactggtaacagaataaaggagtttataaagaatattactccctccatctcatactactaagtgt |
24731454 |
T |
|
| Q |
325 |
catagttagaatatttgtttatctcttattatttatcattttaaaagaccaacgaatcattcagtacctttttccaataataccctgatttattgtatct |
424 |
Q |
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|
|||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24731453 |
catagttacaatatttatttatctcatattatttatcattttacaagaccaacgaatcattcattacctttttccaataataccctgatttattgtatct |
24731354 |
T |
|
| Q |
425 |
aagaccacatattcataatgaagcaaat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
24731353 |
aagaccacatattcataatgaagcaaat |
24731326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 24692325 - 24692102
Alignment:
| Q |
16 |
atgtgatgagtacctcattaggagagaaggtaaacgtcactcgcaggtaagggtccgacgaagctgctggaacaactgtctgagtgagcaaggatttccc |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
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|
| T |
24692325 |
atgtgatgagtacctcattagaagagaaggtaaatgtcactcgcaggtaagggtccgacgaagctgctggaacaactgtctgggtgagcaatgttttccc |
24692226 |
T |
|
| Q |
116 |
agatttccaattaaatgagcttgatatatactgaatgatgtatagactaggattattcccttcttcttcaaaatatatagaatctcccagctttgagaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||| |
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| T |
24692225 |
agatttccaattaaatgagcttgatatatactgaatgatgtatagactaggactattcccttcctcttcaaaatagatggaatctcccagctttgagaat |
24692126 |
T |
|
| Q |
216 |
gattcaattcctaatgaaaaagga |
239 |
Q |
| |
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||||||||||||||||| |||||| |
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|
| T |
24692125 |
gattcaattcctaatgacaaagga |
24692102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 25 - 248
Target Start/End: Complemental strand, 24764000 - 24763777
Alignment:
| Q |
25 |
gtacctcattaggagagaaggtaaacgtcactcgcaggtaagggtccgacgaagctgctggaacaactgtctgagtgagcaaggatttcccagatttcca |
124 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |||||||||||| ||||||| || ||||||||||| ||| ||||||| |||||| ||||||| |
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|
| T |
24764000 |
gtacctcattaggagagaaattaaatgtcactcgtaggtaagggtcccacgaagcagcaggaacaactgtttgattgagcaaaagtttccctaatttcca |
24763901 |
T |
|
| Q |
125 |
attaaatgagcttgatatatactgaatgatgtatagactaggattattcccttcttcttcaaaatatatagaatctcccagctttgagaatgattcaatt |
224 |
Q |
| |
|
||||| ||| |||||||| |||| |||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
24763900 |
attaagtgaacttgatatgtacttaatgatgtatagactaagattattccctttttcttcaaaataaatagaacctcccagctttgagaatgattcaatt |
24763801 |
T |
|
| Q |
225 |
cctaatgaaaaaggaaaaataaat |
248 |
Q |
| |
|
|||||| | ||||||||||||||| |
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|
| T |
24763800 |
cctaatcacaaaggaaaaataaat |
24763777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 24723003 - 24722887
Alignment:
| Q |
114 |
ccagatttccaattaaatgagcttgatatatactgaatgatgtatagactaggattattcccttcttcttcaaaatatatagaatctcccagctttgaga |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
24723003 |
ccagaattccaattaaatgagcttgatatgtactgaatgatgtatagactacgatgtttcccttcttcttcaaaatagatagaatctcccagctttgaga |
24722904 |
T |
|
| Q |
214 |
atgattcaattcctaat |
230 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
24722903 |
atgattcaattcctaat |
24722887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 24723128 - 24723047
Alignment:
| Q |
25 |
gtacctcattaggagagaaggtaaacgtcactcgcaggtaagggtccgacgaagctgctggaacaactgtctgagtgagcaa |
106 |
Q |
| |
|
||||| || |||||||||||||||| ||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24723128 |
gtaccgcagtaggagagaaggtaaatgtcgctcgtaggaaagggtccgacgaagaagctggaacaactgtctgagtgagcaa |
24723047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 34911722 - 34911822
Alignment:
| Q |
295 |
atactccctccgtctcatattattaagtgtcatagttagaatatttgtttatctcttattatttatcattttaaaagaccaacgaatcattcagtacctt |
394 |
Q |
| |
|
||||||||||| ||||||||||| |||||| | |||||||||||||| |||| |||||||| || ||||| || | |||||| |||| | |||||| |
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|
| T |
34911722 |
atactccctccatctcatattat---gtgtcacatgtagaatatttgtttgtctcatattatttgtccttttagaatatcaacgacacattaattacctt |
34911818 |
T |
|
| Q |
395 |
tttc |
398 |
Q |
| |
|
|||| |
|
|
| T |
34911819 |
tttc |
34911822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 23715084 - 23715044
Alignment:
| Q |
330 |
ttagaatatttgtttatctcttattatttatcattttaaaa |
370 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||||||| |
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|
| T |
23715084 |
ttagaatatttgtttgtctcatattatttattattttaaaa |
23715044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 24102756 - 24102716
Alignment:
| Q |
330 |
ttagaatatttgtttatctcttattatttatcattttaaaa |
370 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
24102756 |
ttagaatatttgtttgtctcatattatttattattttaaaa |
24102716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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