View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_high_31 (Length: 221)
Name: NF20980_high_31
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 30574359 - 30574231
Alignment:
| Q |
81 |
ttacaaatctgctgcttttctatttccaacgacagtctactacagcctagaaccactttgattcactgatctttgcc--gtacaatgtgtttcaacatca |
178 |
Q |
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| T |
30574359 |
ttacaagtctgctgcttttctatttccaaggacagtctgctacagcctacagccactttgattcactgatctttgccctgtactatgtgtttcaacacca |
30574260 |
T |
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| Q |
179 |
ttctgtcttgtttactatgtctttcatct |
207 |
Q |
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| T |
30574259 |
ttctgtcttgtttactacgtctttcatct |
30574231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30570558 - 30570497
Alignment:
| Q |
19 |
aacatttgcatcagttattatgctaaagtttcacatgcatcagatgttccttatagaaaaat |
80 |
Q |
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| T |
30570558 |
aacatttgcatcagttattatgctaaagtttcacatgcatcagatgttccttgtagaaaaat |
30570497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30574463 - 30574401
Alignment:
| Q |
19 |
aacatttgcatcagttattatgctaaagtttcacatgcatc-agatgttccttatagaaaaat |
80 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30574463 |
aacatttgcataagttattatgctaaagtttcacatgcatcaagatgttccttatagaaaaat |
30574401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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