View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_1 (Length: 1178)
Name: NF20980_low_1
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_1 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 747 - 1178
Target Start/End: Original strand, 41456871 - 41457298
Alignment:
| Q |
747 |
ataattcaccaaaaaccaaacaatctagacttcacactctttaaaagagttaataaaccaacaactaagggacataattccttccttaattcacttttaa |
846 |
Q |
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| T |
41456871 |
ataattcaccaaaaaccaaacaatctagacttcacactctttaaaagagttaataaaccaacaactaagggacataattccttccttaattcacttttaa |
41456970 |
T |
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| Q |
847 |
gatctattagtcaagttatcaactaattttcaagtttaacnnnnnnnnnnnt-gatgattcttttctttgcttaaaatatactataatcacatacatcca |
945 |
Q |
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| T |
41456971 |
gatctattagtcaagttatcaactaattttcaagtttaacaaaaaaaaaaaaagatgattcttttctttgcttaaaatatacaataatcacatacatcca |
41457070 |
T |
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| Q |
946 |
tcaaataaaaatatgtaaaattttagaaaacgtcgtggatggacacaaccaaacaaggctccacattcatcccacgtaaaa-acagtaacgaatttggca |
1044 |
Q |
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| T |
41457071 |
tcaaataaaaatatgtaaaattttagaaaacgtcgtggatggacacaac--aacaaggctccacattcatcccacgtaaaaaacagtaacgaatttggca |
41457168 |
T |
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| Q |
1045 |
caatgtacctttttcaaccgtgcacaatattgatcactgtatgtgtcatgttctgtacttctgttcaatgtgacttttgaaattgtataattttcaacat |
1144 |
Q |
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| T |
41457169 |
caatgtacctttttcaaccgtgcacaatattgatcactgtatgtgtcatgttctgtacttctgttcagtgtgac--ttgaaattgtagaattttcaacat |
41457266 |
T |
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| Q |
1145 |
catatatactacaaacaatgcaactccaacgtct |
1178 |
Q |
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| T |
41457267 |
c--atatactacaaacaatgcaactccaacgtct |
41457298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 216 - 506
Target Start/End: Original strand, 41456338 - 41456630
Alignment:
| Q |
216 |
atatatagacttttcctccttcacatgtaaattt-atcttgtaagctgactcctctgatagttttagacatcaagttacttagtcttttgcttttcggta |
314 |
Q |
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| T |
41456338 |
atatatggacttttcctccttcacatgtaaattttatcttgtaagctgactcctttgatggttttagacatcaagttgcttagtcttttgcttttcgatg |
41456437 |
T |
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| Q |
315 |
ttttccttttgatnnnnnnnn-tcatttgcacacacaattaatacaatcacataaaaatacatataatttaatcaaattagaaatatatagttttaattc |
413 |
Q |
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| T |
41456438 |
ttttccttttgataaaaaaaaatcatttgcacacacaattaatacaatcacataaaaatacatataatttaatcaaattagaaatatatagttttaattc |
41456537 |
T |
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| Q |
414 |
cttttctcttcctgcatttttcatatatatgtgtgcctaactagtgttctcaaacacttgtcattgtataaaacttcctatcatttaacatca |
506 |
Q |
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| T |
41456538 |
cttttctcttcctgcatttttcatatatatgtgtgcctaactagtgtgctcaaacacttgtcatcgtataaaacttcctatcatttaacatca |
41456630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 41456087 - 41456292
Alignment:
| Q |
15 |
caaaggcacagatgaagttgataatccaacctaaaaaatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatacgaaaaatatttgggc |
114 |
Q |
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| T |
41456087 |
caaaggcatagatgaagttgataatccaacctcaaagatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatatgaaaaatatttaggc |
41456186 |
T |
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| Q |
115 |
acgcaaacaaatacaaacttaaatagaaattatttggtcactacatttaacagaaaatacttgggaggtttcctttt-ccgtacattgagaaaaggtaat |
213 |
Q |
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| T |
41456187 |
acgcgcacaaatacaaacttaaataaaaattatttggtcactacatttaacagaaaatacttgggaggttttcttttcccgtacattgagaaaatgtaat |
41456286 |
T |
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| Q |
214 |
gaatat |
219 |
Q |
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| T |
41456287 |
gaatat |
41456292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 538 - 696
Target Start/End: Original strand, 41456662 - 41456820
Alignment:
| Q |
538 |
gtgagtacctaaatgtttttcatctaaggttgtgttcgattaagtatttgtcatatgtttttgccttgttatatttggtctataaattcgagctttgtct |
637 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
41456662 |
gtgagtacccaaatatttttcatctaaggttgtgttcgattaagtatttctcatatgtttttccctcgttatatttggtctataaattcgagctttgtct |
41456761 |
T |
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| Q |
638 |
ataaatgcccttgtaaatatcattttcaacaaacaataaaattgtcatctttcctcgca |
696 |
Q |
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| T |
41456762 |
ataaatgcccttgtaaatatcattttcaacaaacaataaaattgtcatctttactcgca |
41456820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1125 - 1178
Target Start/End: Original strand, 41441102 - 41441153
Alignment:
| Q |
1125 |
aattgtataattttcaacatcatatatactacaaacaatgcaactccaacgtct |
1178 |
Q |
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| T |
41441102 |
aattgtagaattttcaacatcatat--actacaaaaaatgcaactccaacgtct |
41441153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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