View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_10 (Length: 403)
Name: NF20980_low_10
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 1624943 - 1625313
Alignment:
| Q |
14 |
atcatctcaatgacattggtttgcataatgaaaatgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624943 |
atcatctcaatgacattggtttgcataatgaaattgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
1625042 |
T |
|
| Q |
114 |
tgagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1625043 |
tgagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaaattgtgttttcaactagctt |
1625142 |
T |
|
| Q |
214 |
caaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggtaagagcttgttttaaggct |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625143 |
caaacaatcaccatgaaccgttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggtaagagcttgttttaaggct |
1625242 |
T |
|
| Q |
314 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625243 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
1625313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 1607936 - 1608306
Alignment:
| Q |
14 |
atcatctcaatgacattggtttgcataatgaaaatgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
113 |
Q |
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||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607936 |
atcatttcagtgacattggtttgcataatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
1608035 |
T |
|
| Q |
114 |
tgagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagctt |
213 |
Q |
| |
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| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
1608036 |
ttagccatgtttgtgcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaaattgtgttttcaaatagctt |
1608135 |
T |
|
| Q |
214 |
caaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggtaagagcttgttttaaggct |
313 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608136 |
caaacaatcaccatgaaccgttttatgcacaaatgagttttgttgttgttgagaattttcttgtgcttctttttgcatggtaagagcttgttttaaggct |
1608235 |
T |
|
| Q |
314 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
384 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608236 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
1608306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 1631426 - 1631796
Alignment:
| Q |
14 |
atcatctcaatgacattggtttgcataatgaaaatgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
113 |
Q |
| |
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||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631426 |
atcatttcagtgacattggtttgcataatgaaatcgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
1631525 |
T |
|
| Q |
114 |
tgagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagctt |
213 |
Q |
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| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
1631526 |
ttagccatgtttgtgcatcatttggtgaacaatttttgctagcattgtttaagccttcaagtgtacggttgagatgaaaaattgtgttttcaaatagctt |
1631625 |
T |
|
| Q |
214 |
caaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggtaagagcttgttttaaggct |
313 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631626 |
caaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaatttgcttgtgcttctttttgcatggtaagagcttgttttaaggct |
1631725 |
T |
|
| Q |
314 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631726 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
1631796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 10819116 - 10818749
Alignment:
| Q |
14 |
atcatctcaatgacattggtttgcataatgaaaatgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
113 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10819116 |
atcatctcagtgacattggcttgcataatgaaattgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
10819017 |
T |
|
| Q |
114 |
tgagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagctt |
213 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||| |
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| T |
10819016 |
tgagccatgtttgtgcatcatttggtgaacaatttttacttgcattgtttaagccttcaagtgtgcggttgagatgaaaaattgtattttcatatagctt |
10818917 |
T |
|
| Q |
214 |
caaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggtaagagcttgttttaaggct |
313 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
10818916 |
caaacaatcaccatgaaccgttttatgcaccgatgagttttgtt---gttgagaattttcatgtgcttctttttgcatggtaagagcttggtttaaggct |
10818820 |
T |
|
| Q |
314 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
384 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10818819 |
aattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgattgttcatttgtgttgtgta |
10818749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 18785884 - 18786254
Alignment:
| Q |
14 |
atcatctcaatgacattggtttgcataatgaaaatgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18785884 |
atcatctcaatgacattggtttgcataatgaaattgaaatcttgagcattgagttctaaagctccacttttacatgtttcaatatttgtgagagaagttg |
18785983 |
T |
|
| Q |
114 |
tgagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtacggttgagatgaaaatttgtgttttcaactagctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |
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|
| T |
18785984 |
tgagccatgtttgtacatcattcggtgaacaatttttgcttgcattgtttaagccttcaagtgtatggttgagatgaaaaattgtgttttcaaatagctt |
18786083 |
T |
|
| Q |
214 |
caaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttctttttgcatggtaagagcttgttttaaggct |
313 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
18786084 |
gaaacaatcagcatgaaccgttttatgcacggatgagttttgttgttgttgagaattatcttgtgcttctttttgcatggtaagagcttggtttaaggct |
18786183 |
T |
|
| Q |
314 |
aattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtgta |
384 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
18786184 |
aatttaacaagcatttccctgaattcaactctatgtttgattttgaagtgattgttcatttgtgttgtgta |
18786254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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