View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_14 (Length: 369)
Name: NF20980_low_14
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 47 - 358
Target Start/End: Original strand, 191856 - 192155
Alignment:
| Q |
47 |
gggtgctccatatatccttatataatactataaatacaagttggattaaagcacaagatcaagatatatacatcacattcacatgtatatattaaagcaa |
146 |
Q |
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| T |
191856 |
gggtgctccatatatccttatataatactataaatacaagttggattaaagcacaagatcaagatatatacatcacat------gtatatattaaagcaa |
191949 |
T |
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| Q |
147 |
gttggattcattaatcagtacgtggaaggaagggtacagaccgaaaatatcggatcaagagtggcacaaccttagtttatgtgaatccatgcctgggaat |
246 |
Q |
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| T |
191950 |
gttggattcattaatcagt----ggaaggaagggtacagaccgaaaatatcggatcaagagtggcacaaccttagtttatgtgaatcca--cctgggaat |
192043 |
T |
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| Q |
247 |
caacctcattctatgtctattannnnnnnngactcaaacatctttaatttgttcaaaggggtatttaatgtgtattactacatctttttccatagttaat |
346 |
Q |
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| T |
192044 |
caacctcattctatgtctattattttttttgactcaaacatctttaatttgttgaaaggggtatttaatgtgtattactacatctttttccatagttgat |
192143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 191799 - 191828
Alignment:
| Q |
18 |
atatataacttttgtgataaatattgaagg |
47 |
Q |
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| T |
191799 |
atatataacttttgtgataaatattgaagg |
191828 |
T |
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