View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_15 (Length: 348)
Name: NF20980_low_15
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 137 - 331
Target Start/End: Original strand, 33948435 - 33948629
Alignment:
| Q |
137 |
taccttaaacgaaccaatgatttccaaagacatggaaaatcaaagagacatcatagttagtgaaacaaaatctctattatcattagctttaccaacagca |
236 |
Q |
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| T |
33948435 |
taccttaaacgaaccaatgatttccaaagacatggaaaatcaaagagacatcatagttagtgaaacaaaatctctattatcattagctttaccaacagca |
33948534 |
T |
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| Q |
237 |
ctaacagcactaatcttctatgcacgttccatgatatctatgatgtttcttggtaaacttggtgatgtggaacttgcatcaggttcattagccat |
331 |
Q |
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| T |
33948535 |
ctaacagcactaatcttctatgcacgttccatgatatctatgatgtttcttggtaaacttggtgatgtggaacttgcatcaggttcattagccat |
33948629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 33948322 - 33948373
Alignment:
| Q |
24 |
attttccatcaaataaaacacacttcagccctggtcacttcgattcgtctat |
75 |
Q |
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| T |
33948322 |
attttccatcaaatcaaacacacttcagccctggtcacttcaattcgtctat |
33948373 |
T |
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