View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_16 (Length: 340)
Name: NF20980_low_16
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 35922688 - 35922999
Alignment:
| Q |
11 |
cacagatgacataagggcagcatcatccttaaacccaacagaactaaatagcacaggtgcataaaacattataacattgattcctgtaaattgctggaag |
110 |
Q |
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| T |
35922688 |
cacagatgacataagggcagcatcatcctcaaacccaacagaactaaatagcacaggtgcataaaacattataacattgattcctgtaaattgctggaag |
35922787 |
T |
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| Q |
111 |
aatggaatcaatatggccatagaaagttgaggcctatatttcctttgcaacaaattcctccaagggtttttcacttgcatgcatgcttcactagctgcta |
210 |
Q |
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| T |
35922788 |
aatggaatcaatatggccatagaaagttgaggcctatatttcctttgcaacaaattcctccaagggtttttcacttgcatgcatgcttcactagctgcta |
35922887 |
T |
|
| Q |
211 |
caagatcattgaactcttcatcaacatcttccactccacggattcgcttaagatgagccttggctccatctcgattaccacgttcgatcattgaattagg |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35922888 |
caaggtcattgaactcttcatcaacatcttccactccacggattcgcttaagatgaaccttggctccatctcgatcaccacgttcgatcattgaattagg |
35922987 |
T |
|
| Q |
311 |
ggtgtccggaag |
322 |
Q |
| |
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|||||||||||| |
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| T |
35922988 |
ggtgtccggaag |
35922999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 36202363 - 36202059
Alignment:
| Q |
18 |
gacataagggcagcatcatccttaaacccaacagaactaaatagcacaggtgcataaaacattataacattgattcctgtaaattgctggaagaatggaa |
117 |
Q |
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|||||||| | |||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| | |
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| T |
36202363 |
gacataagtgaagcatcgtccttaaacccaatggaattaaatagcacaggtgcataaaacatgataacattgatgcctgtaaattgttggaagaatggta |
36202264 |
T |
|
| Q |
118 |
tcaatatggccatagaaagttgaggcctatatttcctttgcaacaaattcctccaagggtttttcacttgcatgcatgcttcactagctgctacaagatc |
217 |
Q |
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|||||| ||||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||| | || ||||||||||||||||| || |
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| T |
36202263 |
tcaatacagccatagtaagctgaggtctatatttcctctgcaacaaatttctccaagggttttcaacttgcattgaggcctcactagctgctacaaggtc |
36202164 |
T |
|
| Q |
218 |
attgaactcttcatcaacatcttccactccacggattcgcttaagatgagccttggctccatctcgattaccacgttcgatcattgaattaggggtgtcc |
317 |
Q |
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||| |||||||||||||||||||| | || || |||| |||||| ||||| || |||||||| |||| |||||||||||||||||| ||||||||||| |
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| T |
36202163 |
attaaactcttcatcaacatcttcaataccgcgaattctcttaagttgagctttagctccatcgcgatcaccacgttcgatcattgagttaggggtgtcg |
36202064 |
T |
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| Q |
318 |
ggaag |
322 |
Q |
| |
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||||| |
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| T |
36202063 |
ggaag |
36202059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 35490208 - 35490263
Alignment:
| Q |
63 |
acaggtgcataaaacattataacattgattcctgtaaattgctggaagaatggaat |
118 |
Q |
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||||||||||||||||| |||||||||||||| || | ||| |||||||||||||| |
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| T |
35490208 |
acaggtgcataaaacatgataacattgattccggtgagttgttggaagaatggaat |
35490263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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