View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_18 (Length: 321)
Name: NF20980_low_18
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 32693890 - 32693597
Alignment:
| Q |
10 |
gagaagaagaagataaaagaaggtgtagagttttacagcaacggtgatttttacgaaggggagtttcataaaggaagaagtaacggaagtggtgtgtata |
109 |
Q |
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| T |
32693890 |
gagaaaaagaagataaaagaaggtgtagagttttacagcaacggtgatttttacgaaggggagtttcataaaggaagaagtaacggaagtggtgtgtata |
32693791 |
T |
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| Q |
110 |
attactttgtgaatggaagatatgaaggtgactgggttgatggaagatatgatggatatggaattgagagttgggctagagggagtagatataagggtca |
209 |
Q |
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| T |
32693790 |
attactttgtgaatggaagatatgaaggtgattgggttgatggaagatatgatggatatggaattgagagttgggctagagggagtagatataagggtca |
32693691 |
T |
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| Q |
210 |
gtatagaaaaggaatgagacatggttatggtgtttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggt |
303 |
Q |
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| T |
32693690 |
gtatagaaaaggaatgagacatggttatggtgtttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggt |
32693597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 304
Target Start/End: Complemental strand, 24239126 - 24238862
Alignment:
| Q |
40 |
ttttacagcaacggtgatttttacgaaggggagtttcataaaggaagaagtaacggaagtggtgtgtataattactttgtgaatggaagatatgaaggtg |
139 |
Q |
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| T |
24239126 |
ttttacagcaatggtgatttctacgaaggagaatttcacggtggaaagtgtaatggaagtggagtttatcattattatgtgagtggaagatatgaaggtg |
24239027 |
T |
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| Q |
140 |
actgggttgatggaagatatgatggatatggaattgagagttgggctagagggagtagatataagggtcagtatagaaaaggaatgagacatggttatgg |
239 |
Q |
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| T |
24239026 |
attgggttgatggaaaatatgatggttatggaattgaaagctgggctaggggaagtagatataagggttgttataaacaaggtttgagacatggttatgg |
24238927 |
T |
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| Q |
240 |
tgtttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggtt |
304 |
Q |
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| T |
24238926 |
tgtttatagattttatactggtgattgttattctggggaatggtttaatggacagagtcatggtt |
24238862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 303
Target Start/End: Complemental strand, 1587059 - 1586879
Alignment:
| Q |
123 |
tggaagatatgaaggtgactgggttgatggaagatatgatggatatggaattgagagttgggctagagggagtagatataagggtcagtatagaaaagga |
222 |
Q |
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| T |
1587059 |
tggaagatatgaagggaattgggttgacgggaaatatgaaggttttggtgttgagagttggagtaagggaagtaggtataagggtatgtatagagatgga |
1586960 |
T |
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| Q |
223 |
atgagacatggttatggtgtttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggt |
303 |
Q |
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| T |
1586959 |
ttgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatggttgaatggacagagtcatggt |
1586879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 17303695 - 17303611
Alignment:
| Q |
218 |
aaggaatgagacatggttatggtgtttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatgg |
302 |
Q |
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| T |
17303695 |
aaggattgagacatgggtttggtgtttataggttttatactggggatgtttatactggagaatggtctaatggacagagtcatgg |
17303611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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