View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_19 (Length: 309)
Name: NF20980_low_19
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 49509446 - 49509201
Alignment:
| Q |
17 |
agattcatgatatatgttcatgccaaaatgatgataggtaagggatccaacatatatatcatctgtttctatttacatttattagtgacactgctaacta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509446 |
agattcatgatatatgttcatgccaaaatgatgataggtaagggatccaacataaatatcatctgtttctatttacatttattagtgacactgctaacta |
49509347 |
T |
|
| Q |
117 |
ttttacaactgttcccgaagatatttgaacttacttcgttcattgagattacatgatcaaattcttaccattgaattgacactttccaattaattagcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49509346 |
ttttacaactgttcccgaagatatttgaacttacttcgttcattgagattacatgatcaaattcttaccattgaattgacactttccaattaattagcac |
49509247 |
T |
|
| Q |
217 |
atacgcctttgcaaaagaaaatttattaacacgttcttgtgattta |
262 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49509246 |
atacgcctttgcaaaagaaaatttattaacacattcttgtgattta |
49509201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 49520592 - 49520551
Alignment:
| Q |
17 |
agattcatgatatatgttcatgccaaaatgatgataggtaag |
58 |
Q |
| |
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||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
49520592 |
agattcatgatctatgttcattccaagatgatgataggtaag |
49520551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 2415934 - 2415896
Alignment:
| Q |
20 |
ttcatgatatatgttcatgccaaaatgatgataggtaag |
58 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| |
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| T |
2415934 |
ttcatgatatatgttcataccaagatgatgataggtaag |
2415896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 44663124 - 44663162
Alignment:
| Q |
20 |
ttcatgatatatgttcatgccaaaatgatgataggtaag |
58 |
Q |
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|||||||| |||||||||||||| ||||||||||||||| |
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| T |
44663124 |
ttcatgatctatgttcatgccaagatgatgataggtaag |
44663162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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