View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_21 (Length: 265)
Name: NF20980_low_21
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 40465000 - 40464766
Alignment:
| Q |
19 |
aaaataccaaagactcgttgaaaactttatcaaaatcagcagtataagaaaaatcagtagattcaggtaacacttccatcataagcttatgtctctcctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465000 |
aaaataccaaagactcgttgaaaactttatcaaaatcagcagtataagaaaaatcagtagattcaggtaacacttccatcataagcttatgtctctcctc |
40464901 |
T |
|
| Q |
119 |
tgaataccaccctacaattgaactcatatgtggaagaaacaggtttttccataattcaggagcaaaatcaatcctagagaaaaaagggtccacaatgaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40464900 |
tgaataccaccctacaattgaactcatatgtggaagaaacaggtttttccataattcaggagcaaaatcaatcctagagaaaaaagggtccacaatgaac |
40464801 |
T |
|
| Q |
219 |
atctcaagagaatgataaatacaactcttaatatt |
253 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40464800 |
atctcaagagaatgataaatacaactcttaatatt |
40464766 |
T |
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