View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_22 (Length: 253)
Name: NF20980_low_22
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 18783209 - 18783450
Alignment:
| Q |
12 |
agagactaaggaaggaatttgaaatggaaggcaaacaagttcttcctaaacaagaatgtgaagtgtcagattctaacataataacaccagggacagattt |
111 |
Q |
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| T |
18783209 |
agagactaaggaaggaatttgaaatggaaggcaaacaagttcttcctaaacaagaatgtgaagtgtcagattctaacataataacaccagggacagattt |
18783308 |
T |
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| Q |
112 |
catgcaccaaatttcaaaggctcttaagagttacatttcttcaaagatatcctctgatcctttatggaagagtattatggtatgataataacaccatcaa |
211 |
Q |
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| T |
18783309 |
catgcaccaaatttcaaacgctcttaagagttacatttcttcaaagatatcctctgatcctttatggaagggtattatggtatgataataacaccatcaa |
18783408 |
T |
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| Q |
212 |
tcactcttttttaacattattataaataattgattattgact |
253 |
Q |
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| T |
18783409 |
tcactcttttttaacattattataaataattgattattgact |
18783450 |
T |
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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 22872559 - 22872715
Alignment:
| Q |
5 |
gaggagcagagactaaggaaggaatttgaaatggaaggcaaacaagttcttcctaaacaagaatgtgaagtgtcagattctaacataataacaccaggga |
104 |
Q |
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|||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||| | |||| |
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| T |
22872559 |
gaggaggagagactgaggaaggaatttgaaatggaag-caaacaaattcttcctaaacaagaatgtcaagtgtcagaatctaatataataacaactggga |
22872657 |
T |
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| Q |
105 |
cagatttcatgcaccaaatttcaaaggctcttaagagttacatttcttcaaagatatc |
162 |
Q |
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| T |
22872658 |
cagaattcatgcaccaacttttcaagaatcttaaaagttatatctcttcaaggatatc |
22872715 |
T |
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