View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20980_low_24 (Length: 250)

Name: NF20980_low_24
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20980_low_24
NF20980_low_24
[»] chr3 (2 HSPs)
chr3 (1-240)||(44901632-44901871)
chr3 (84-113)||(7671806-7671835)
[»] chr4 (3 HSPs)
chr4 (8-70)||(16601650-16601712)
chr4 (39-120)||(19842434-19842509)
chr4 (84-116)||(44957293-44957325)
[»] chr5 (2 HSPs)
chr5 (84-120)||(6560822-6560858)
chr5 (84-116)||(21605648-21605680)
[»] chr8 (3 HSPs)
chr8 (84-114)||(12801109-12801139)
chr8 (80-114)||(40548058-40548092)
chr8 (81-114)||(28090194-28090227)
[»] chr2 (3 HSPs)
chr2 (84-114)||(7467122-7467152)
chr2 (84-116)||(6884159-6884191)
chr2 (84-112)||(45690874-45690902)
[»] chr1 (4 HSPs)
chr1 (84-118)||(26011316-26011350)
chr1 (84-113)||(47209049-47209078)
chr1 (86-114)||(30547141-30547169)
chr1 (84-116)||(51184042-51184074)
[»] chr7 (3 HSPs)
chr7 (81-114)||(2088870-2088903)
chr7 (84-121)||(27800402-27800439)
chr7 (9-70)||(31311386-31311447)
[»] chr6 (3 HSPs)
chr6 (84-113)||(6975074-6975103)
chr6 (84-120)||(1371405-1371441)
chr6 (84-120)||(1379153-1379189)
[»] scaffold0604 (1 HSPs)
scaffold0604 (84-116)||(2020-2052)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44901632 - 44901871
Alignment:
Q  1 caactttaaaaataattctttttcttcnnnnnnncaagtcatttaattattaatttaacggtttggtgtatcattagtagtatactcaaatttttgggtg 100  Q
    |||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  44901632 caactttaaaaataattctttttcttcaaaaaaactagtcatttaattattaatttaacggtttggggtatcatcaatagtatactcaaatttttgggtg 44901731  T
Q  101 taccatagaatttgtcttatcaatatctatctacattgacatggagacaccttccttgtactagtaccattttgattatgaattttaaagttttttctgt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44901732 taccatagaatttgtcttatcgatatctatctacattgacatggagacaccttccttgtactagtaccattttgattatgaattttaaagttttttctgt 44901831  T
Q  201 tgttcaaaaaagaaatggtgcggttaatgtatagtctgtg 240  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  44901832 tgttcaaaaaagaaatggtgcggttaatgtttagtctgtg 44901871  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 7671835 - 7671806
Alignment:
Q  84 actcaaatttttgggtgtaccatagaattt 113  Q
    ||||||||||||||||||||||||||||||    
T  7671835 actcaaatttttgggtgtaccatagaattt 7671806  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 16601712 - 16601650
Alignment:
Q  8 aaaaataattctttttcttcnnnnnnncaagtcatttaattattaatttaacggtttggtgta 70  Q
    ||||||||||||||||||||       ||| |||||||||||||||||||||| |||||||||    
T  16601712 aaaaataattctttttcttcaaaaatacaactcatttaattattaatttaacgatttggtgta 16601650  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 19842509 - 19842434
Alignment:
Q  39 tcatttaattattaatttaacggtttggtgtatcattagtagtatactcaaatttttgggtgtaccatagaatttgtcttat 120  Q
    |||||||||||||||||||||  |||||||||       | ||| |||||||||||||| |||||||||||||||| |||||    
T  19842509 tcatttaattattaatttaacaatttggtgtac------tggtacactcaaatttttggatgtaccatagaatttgccttat 19842434  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 44957293 - 44957325
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtc 116  Q
    ||||||||||||| |||||||||||||||||||    
T  44957293 actcaaatttttgagtgtaccatagaatttgtc 44957325  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 6560858 - 6560822
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtcttat 120  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6560858 actcaaattattgggtgtaccatagaatttgtcttat 6560822  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 21605680 - 21605648
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtc 116  Q
    ||||||||| |||||||||||||||||||||||    
T  21605680 actcaaattgttgggtgtaccatagaatttgtc 21605648  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 12801139 - 12801109
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttg 114  Q
    |||||||||||||||||||||||||||||||    
T  12801139 actcaaatttttgggtgtaccatagaatttg 12801109  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 40548058 - 40548092
Alignment:
Q  80 gtatactcaaatttttgggtgtaccatagaatttg 114  Q
    |||||||||||||||| ||||||||||||||||||    
T  40548058 gtatactcaaatttttaggtgtaccatagaatttg 40548092  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 28090227 - 28090194
Alignment:
Q  81 tatactcaaatttttgggtgtaccatagaatttg 114  Q
    |||||||||||| |||||||||||||||||||||    
T  28090227 tatactcaaattattgggtgtaccatagaatttg 28090194  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 7467152 - 7467122
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttg 114  Q
    |||||||||||||||||||||||||||||||    
T  7467152 actcaaatttttgggtgtaccatagaatttg 7467122  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 6884191 - 6884159
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtc 116  Q
    ||||||||| |||||||||||||||||||||||    
T  6884191 actcaaattgttgggtgtaccatagaatttgtc 6884159  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 112
Target Start/End: Original strand, 45690874 - 45690902
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatt 112  Q
    |||||||||||||||||||||||||||||    
T  45690874 actcaaatttttgggtgtaccatagaatt 45690902  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 26011316 - 26011350
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtctt 118  Q
    |||||||||||||||||||||||| ||||||||||    
T  26011316 actcaaatttttgggtgtaccataaaatttgtctt 26011350  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 47209078 - 47209049
Alignment:
Q  84 actcaaatttttgggtgtaccatagaattt 113  Q
    ||||||||||||||||||||||||||||||    
T  47209078 actcaaatttttgggtgtaccatagaattt 47209049  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 30547141 - 30547169
Alignment:
Q  86 tcaaatttttgggtgtaccatagaatttg 114  Q
    |||||||||||||||||||||||||||||    
T  30547141 tcaaatttttgggtgtaccatagaatttg 30547169  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 51184074 - 51184042
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtc 116  Q
    |||||||| ||||||||||||||||||||||||    
T  51184074 actcaaatctttgggtgtaccatagaatttgtc 51184042  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 2088903 - 2088870
Alignment:
Q  81 tatactcaaatttttgggtgtaccatagaatttg 114  Q
    |||||||||||||||| |||||||||||||||||    
T  2088903 tatactcaaatttttgagtgtaccatagaatttg 2088870  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 27800402 - 27800439
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtcttatc 121  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  27800402 actcaaatttttggatgtaccatagaatttgccttatc 27800439  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 31311447 - 31311386
Alignment:
Q  9 aaaataattctttttcttcnnnnnnncaagtcatttaattattaatttaacggtttggtgta 70  Q
    |||||||||||||||||||       ||| |||||||||||||||||||||| |||| ||||    
T  31311447 aaaataattctttttcttcaaaaaaacaactcatttaattattaatttaacgatttgatgta 31311386  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 6975074 - 6975103
Alignment:
Q  84 actcaaatttttgggtgtaccatagaattt 113  Q
    ||||||||||||||||||||||||||||||    
T  6975074 actcaaatttttgggtgtaccatagaattt 6975103  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 1371441 - 1371405
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtcttat 120  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  1371441 actcaaatttttgagtgtgccatagaatttgtcttat 1371405  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 1379189 - 1379153
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtcttat 120  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  1379189 actcaaatttttgagtgtgccatagaatttgtcttat 1379153  T

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Target: scaffold0604 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 2052 - 2020
Alignment:
Q  84 actcaaatttttgggtgtaccatagaatttgtc 116  Q
    ||||||||||||| |||||||||||||||||||    
T  2052 actcaaatttttgagtgtaccatagaatttgtc 2020  T

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