View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_28 (Length: 241)
Name: NF20980_low_28
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 48560837 - 48561032
Alignment:
| Q |
31 |
acaggacaaatgaaagaactttaattccataggcaatattgaatcgaacagaaaagtgacatgtgtaaattgaagtcaaggaaggaagagtggtaccaac |
130 |
Q |
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| T |
48560837 |
acaggacaaatgaaagaactttaattccataggcaatattgaatcaaacagaaaagtgacatgtgtaaattgaagtcaaggaaggaagagtcgtaccaac |
48560936 |
T |
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| Q |
131 |
aatcatcataaattgttcactgatcattcattag-aaaaacataaacaataattagcataattaaaccttataaccctgtgctgttgtagaaaaac |
225 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48560937 |
aatcatcataaattgttcactgatcattcattagaaaaaacataaacaataattagcataattaaaccttataaccctgtgctgttgtagaaaaac |
48561032 |
T |
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