View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20980_low_29 (Length: 239)

Name: NF20980_low_29
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20980_low_29
NF20980_low_29
[»] chr5 (3 HSPs)
chr5 (19-155)||(1549861-1549997)
chr5 (172-223)||(1549738-1549794)
chr5 (83-157)||(40560855-40560929)
[»] chr4 (2 HSPs)
chr4 (53-158)||(33130308-33130413)
chr4 (55-152)||(3285634-3285731)
[»] chr3 (2 HSPs)
chr3 (59-152)||(16679994-16680087)
chr3 (53-157)||(21347494-21347598)
[»] chr1 (4 HSPs)
chr1 (53-155)||(30993225-30993327)
chr1 (53-155)||(43070306-43070408)
chr1 (175-222)||(30993165-30993212)
chr1 (175-222)||(43070421-43070468)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 1549997 - 1549861
Alignment:
Q  19 tgaatttaattcacattagatgattttgtttagcggtgtgcataaaaactcgattagctgacccaaactgtaaatctagtgaaccaaattagaaaagcta 118  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  1549997 tgaatttatttcacattagatgattttgtttaggggtgtgcataaaaactcgactagctgacccaaactgtaaatctggtgaaccaaattagaaaagcta 1549898  T
Q  119 aatccactttcatttgacttgatccaatccattttaa 155  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1549897 aatccactttcatttgacttgagccaatccattttaa 1549861  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 1549794 - 1549738
Alignment:
Q  172 aagcgggtcggttaccaattaaaacgggacg-----gttacccatttaccatctcac 223  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  1549794 aagcgggtcggttaccaattaaaacgggacggttaggttacccatttaccatctcac 1549738  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 40560929 - 40560855
Alignment:
Q  83 aaactgtaaatctagtgaaccaaattagaaaagctaaatccactttcatttgacttgatccaatccattttaaaa 157  Q
    ||||||||||||| |||||| ||| ||||||| || || |||||||||||| || ||||||| || |||||||||    
T  40560929 aaactgtaaatctggtgaacgaaactagaaaaactcaaaccactttcatttaacctgatccagtcaattttaaaa 40560855  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 33130308 - 33130413
Alignment:
Q  53 ggtgtgcataaaaactcgattagctgacccaaactgtaaatctagtgaaccaaattagaaaagctaaatccactttcatttgacttgatccaatccattt 152  Q
    |||||||||||||||| |||||||| ||||||||| ||||| | |||||||||| |||||||||| ||||||||||| |||||| ||||||||||| |||    
T  33130308 ggtgtgcataaaaactggattagctaacccaaactttaaatatggtgaaccaaactagaaaagctcaatccactttcttttgacctgatccaatcccttt 33130407  T
Q  153 taaaaa 158  Q
    ||||||    
T  33130408 taaaaa 33130413  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 3285731 - 3285634
Alignment:
Q  55 tgtgcataaaaactcgattagctgacccaaactgtaaatctagtgaaccaaattagaaaagctaaatccactttcatttgacttgatccaatccattt 152  Q
    |||||||||||||| |||||||||| |||||||||||||||  |||| |||| ||||||||   ||||||||||||||| || | ||||||| |||||    
T  3285731 tgtgcataaaaactggattagctgatccaaactgtaaatctgatgaatcaaactagaaaagtccaatccactttcatttaacctaatccaattcattt 3285634  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 16679994 - 16680087
Alignment:
Q  59 cataaaaactcgattagctgacccaaactgtaaatctagtgaaccaaattagaaaagctaaatccactttcatttgacttgatccaatccattt 152  Q
    |||||||||| ||||| |||||||||||| ||||||| |||||||||| |||||||||  |||||||||||||||||| |||||||||||||||    
T  16679994 cataaaaactggattaactgacccaaactataaatctggtgaaccaaactagaaaagcccaatccactttcatttgacctgatccaatccattt 16680087  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 21347494 - 21347598
Alignment:
Q  53 ggtgtgcataaaaactcgattagctgacccaaactgtaaatctagtgaaccaaattagaaaagctaaatccactttcatttgacttgatccaatccattt 152  Q
    |||||| ||||||||| ||| ||| ||||||| |||  ||| | |||||||||| |||||||||  || ||||||||||||||||||||||||| |||||    
T  21347494 ggtgtgtataaaaactggatcagccgacccaacctgagaatatggtgaaccaaagtagaaaagcccaaaccactttcatttgacttgatccaattcattt 21347593  T
Q  153 taaaa 157  Q
    |||||    
T  21347594 taaaa 21347598  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 30993327 - 30993225
Alignment:
Q  53 ggtgtgcataaaaactcgattagctgacccaaactgtaaatctagtgaaccaaattagaaaagctaaatccactttcatttgacttgatccaatccattt 152  Q
    |||||||||||||||| ||| ||||||||||||||| |||| | ||||||||||||||||||||  || ||| ||||||||||| ||||||| | |||||    
T  30993327 ggtgtgcataaaaactggatcagctgacccaaactgaaaatttggtgaaccaaattagaaaagcccaaaccattttcatttgacctgatccagttcattt 30993228  T
Q  153 taa 155  Q
    |||    
T  30993227 taa 30993225  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 43070306 - 43070408
Alignment:
Q  53 ggtgtgcataaaaactcgattagctgacccaaactgtaaatctagtgaaccaaattagaaaagctaaatccactttcatttgacttgatccaatccattt 152  Q
    |||||||||||||||| ||| ||||||||||||||| |||| | ||||||||||||||||||||  || ||| ||||||||||| ||||||| | |||||    
T  43070306 ggtgtgcataaaaactggatcagctgacccaaactgaaaatttggtgaaccaaattagaaaagcccaaaccattttcatttgacctgatccagttcattt 43070405  T
Q  153 taa 155  Q
    |||    
T  43070406 taa 43070408  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 30993212 - 30993165
Alignment:
Q  175 cgggtcggttaccaattaaaacgggacggttacccatttaccatctca 222  Q
    |||||||||| |||| ||||||||| ||||||||||||||| ||||||    
T  30993212 cgggtcggttgccaaataaaacgggtcggttacccatttactatctca 30993165  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 43070421 - 43070468
Alignment:
Q  175 cgggtcggttaccaattaaaacgggacggttacccatttaccatctca 222  Q
    |||||||||| |||| ||||||||| ||||||||||||||| ||||||    
T  43070421 cgggtcggttgccaaataaaacgggtcggttacccatttactatctca 43070468  T

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