View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_32 (Length: 228)
Name: NF20980_low_32
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 5111308 - 5111099
Alignment:
| Q |
1 |
agtaaagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5111308 |
agtaaagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgtcactcaaatccaaccatttcaatctctt |
5111209 |
T |
|
| Q |
101 |
caactgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5111208 |
caactgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattgta |
5111109 |
T |
|
| Q |
201 |
ccttcaaggt |
210 |
Q |
| |
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|||||||||| |
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|
| T |
5111108 |
ccttcaaggt |
5111099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 5083770 - 5083972
Alignment:
| Q |
8 |
atccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctcttcaactga |
107 |
Q |
| |
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|||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
5083770 |
atccaattgttgaagttttgataagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaattcaacaatttcaatctcttcaactga |
5083869 |
T |
|
| Q |
108 |
agtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaa |
207 |
Q |
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|
||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||||||| |||||| |||||||||||||||| |
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| T |
5083870 |
agtaactcatgtggtaactcaccatggaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaa |
5083969 |
T |
|
| Q |
208 |
ggt |
210 |
Q |
| |
|
||| |
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|
| T |
5083970 |
ggt |
5083972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 5094298 - 5094097
Alignment:
| Q |
8 |
atccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctcttcaactga |
107 |
Q |
| |
|
|||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||| |
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| T |
5094298 |
atccaattgttgaagttttgataactcccctatccttgaaggaatttctccaacaaaatcattgttgcttaaattcaacaatttcaatcttttcaactga |
5094199 |
T |
|
| Q |
108 |
agtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaa |
207 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5094198 |
agcaactcatgtggtaactcaccatggaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaa |
5094099 |
T |
|
| Q |
208 |
gg |
209 |
Q |
| |
|
|| |
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|
| T |
5094098 |
gg |
5094097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 14427589 - 14427753
Alignment:
| Q |
48 |
ggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatagaaactattgc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
14427589 |
ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgc |
14427688 |
T |
|
| Q |
145 |
cttgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaagg |
209 |
Q |
| |
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| |||| ||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |
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|
| T |
14427689 |
catgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaagg |
14427753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 16873519 - 16873359
Alignment:
| Q |
47 |
aggaatttctccaacaaaatcattgttgctcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaactattgcct |
146 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || || | |||| ||||| || ||||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
16873519 |
aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaactattgcct |
16873420 |
T |
|
| Q |
147 |
tgtaaatcaagaacaacaaggaaagaaagatttcccagttgaggagaaattgtaccttcaa |
207 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |
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|
| T |
16873419 |
tgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa |
16873359 |
T |
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