View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_4 (Length: 428)
Name: NF20980_low_4
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 5155332 - 5155722
Alignment:
| Q |
16 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaataattaccaatacaagttggaaacaaaaacctactccatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5155332 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaataattaccaatacaagttggaaacaaaaacctactccatg |
5155431 |
T |
|
| Q |
116 |
gaaaatctagaagccaatccatctaaattggactcaaacaacatatttaaagaatgaattattaggtttttatatgaggaacaaggtaattaactaatta |
215 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5155432 |
gaaaatctagaagccaatctatctaaattggagtcaaacaacaaattgaaagaaggaattattaggtttttatatgaggaacaaggaaattaactaatta |
5155531 |
T |
|
| Q |
216 |
agagaaagcagactcagagttgcaacattaaactcaaatacggaatcaacggaaataacggtacactcaacttagggaggaaaacggaaccaggggaatt |
315 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5155532 |
agagaaagcagactcagagttggaacattaaactcaaatatggaatcagcggaaatagcggtacactcgacttagggaggaaaacggaaccaggggaatt |
5155631 |
T |
|
| Q |
316 |
gatcgacaaacgataagaaacgagggattttaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattcattgaaagcatg |
406 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5155632 |
gatcgacaaacgataagaaacgggggtttttaagtttaagaagtggaaggaaatcaaggtgaatcatttcaaaagattcattgaaagcatg |
5155722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 90 - 255
Target Start/End: Original strand, 3384603 - 3384775
Alignment:
| Q |
90 |
agttggaaacaaaaacctactccatggaaaatc---tagaagcca----atccatctaaattggactcaaacaacatatttaaagaatgaattattaggt |
182 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||| | | ||||||||||||||||||||||||||| ||| |||||| |||||||||||| |
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| T |
3384603 |
agttggaaacaaaaacttactccatggaaaatcatctagaatctatctaatccatctaaattggactcaaacaacaaattgaaagaaggaattattaggt |
3384702 |
T |
|
| Q |
183 |
ttttatatgaggaacaaggtaattaactaattaagagaaagcagactcagagttgcaacattaaactcaaata |
255 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3384703 |
ttttatatgaggaacaaagcaattaactaattaagagaaagcagactcagagttgcaacattaaactcaaata |
3384775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 8530906 - 8530527
Alignment:
| Q |
16 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaataattaccaatacaagttggaaacaaaaacctactccatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8530906 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaata----------caagttggaaacaaaaacctactccatg |
8530817 |
T |
|
| Q |
116 |
gaaaatctagaagccaatccatctaaattggactcaaacaacatatttaaagaatgaattattaggtttttatatgaggaacaaggtaattaactaatta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8530816 |
gaaaatctagaagccaatccatctaaattggactcaaacaacatatttaaagaatgaattattaggtttttatatgaggaacaaggtaattaactaatta |
8530717 |
T |
|
| Q |
216 |
agagaaagcagactcagagttgcaacattaaactcaaatacggaatcaacggaaataacggtacactcaacttagggaggaaaacggaaccaggggaatt |
315 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8530716 |
agagaaagtagactcagagttgcaacattaaactcaaatacggaatcagcggaaataacggtacactcgacttagggaggaaaacggaaccaggggaatt |
8530617 |
T |
|
| Q |
316 |
gatcgacaaacgataagaaacgagggattttaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattcattgaaagcatg |
406 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8530616 |
gatcgacaaacgataagaaacgagggttttaaagtttgagaagtggaaggaaatcagggtgaatcatttcaaaagattca-tgaaagcatg |
8530527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 26794791 - 26794950
Alignment:
| Q |
91 |
gttggaaac-aaaaacctactccatggaaaatctagaagccaatccatctaaattggactcaaacaacatatttaaa-gaatgaattattaggtttttat |
188 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||| || ||| |||||||||| ||| |
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| T |
26794791 |
gttggaaaccaaaaacttactccatggaaaatctagaagctaatccatctaaattggactcaaacaacaaactgaaaccaaggaactattaggtttctat |
26794890 |
T |
|
| Q |
189 |
atgaggaacaaggtaattaactaattaagagaaagcagactcagagttgcaacattaaac |
248 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||| | |||||||| ||||||||||||| |
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|
| T |
26794891 |
atgaggaacaagacaataaactaataaagagaaagaacactcagagatgcaacattaaac |
26794950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 16003535 - 16003590
Alignment:
| Q |
91 |
gttggaaac-aaaaacctactccatggaaaatctagaagccaatccatctaaattg |
145 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
16003535 |
gttggaaaccaaaaatttactccatggaaaatctagaagctaatccatctaaattg |
16003590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 26794734 - 26794787
Alignment:
| Q |
16 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaat |
69 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| |
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| T |
26794734 |
atgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaat |
26794787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 40721765 - 40721924
Alignment:
| Q |
91 |
gttggaaac-aaaaacctactccatggaaaatctagaagccaatccatctaaattggactcaaacaacatatttaaa-gaatgaattattaggtttttat |
188 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| | | ||| || ||| |||||||||| ||| |
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| T |
40721765 |
gttggaaaccaaaaacttactccgtggaaaatctagaagctaatccatctaaattggactcaaacaacaaactcaaaccaaggaactattaggtttctat |
40721864 |
T |
|
| Q |
189 |
atgaggaacaaggtaattaactaattaagagaaagcagactcagagttgcaacattaaac |
248 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||| | |||||||| ||||||||||||| |
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|
| T |
40721865 |
atgaggaacaagacaataaactaataaagagaaagaacactcagagatgcaacattaaac |
40721924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 40721708 - 40721761
Alignment:
| Q |
16 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaat |
69 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| |
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| T |
40721708 |
atgccaatgtcacaactagtatatcggatcccatcaataccagaagccaacaat |
40721761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 27222989 - 27222916
Alignment:
| Q |
175 |
tattaggtttttatatgaggaacaaggtaattaactaattaagagaaagcagactcagagttgcaacattaaac |
248 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||||||| ||||||||| | |||||| | ||||||||||||| |
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|
| T |
27222989 |
tattaggtttctatatgaggaacaagacaataaactaataaagagaaagaacactcagtgatgcaacattaaac |
27222916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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