View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20980_low_5 (Length: 419)
Name: NF20980_low_5
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 3361765 - 3361989
Alignment:
| Q |
16 |
aaagtaatcataatggcactcaagactctcagagtagttaccatcataggaaactaacaccagcaaagtacatgcaaaaagatataaactcatttatcat |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3361765 |
aaagtaatcatagtggcactcaagactc--agagtagttaccatcataggaaactaacaccagcaaagtacatgcaaaaagatataaactcatttatcat |
3361862 |
T |
|
| Q |
116 |
ataagtataacaccaaaactgatatagataattaataaccaaagatgaggtaaaataagaaaccttgatcaaaagatgaactccatagattaaaagccat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3361863 |
ataagtataacaccaaaactgatatagataattaataaccaaagatgaggtaaaataagaaaccttgatcaaaagatgaactccatagattaaaagccat |
3361962 |
T |
|
| Q |
216 |
gtatgaaatgcaagtaactatttcctg |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3361963 |
gtatgaaatgcaagtaactatttcctg |
3361989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 3362023 - 3362170
Alignment:
| Q |
276 |
tcacgaatttatctaatactattattaatccaaagaagcatcaacaatagaaatgcaacagagaacaaaaagg----aataaataaataaataatgtgat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3362023 |
tcacgaatttatctaatactattattaatccaaagaagcatcaacaatagaaatgcaacagagaacaaaaaggaataaataaataaataaataatgtgat |
3362122 |
T |
|
| Q |
372 |
caatggagaaagtacaagtgaaaccaaaccaacatcttgttcttgttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3362123 |
caatggagaaagtacaagtgaaaccaaaccaacatcttgttcttgttc |
3362170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University