View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_7 (Length: 410)
Name: NF20980_low_7
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 12337163 - 12337551
Alignment:
| Q |
13 |
gttcttaccatcttcaggcctttgtccaagtatcctcaatgcaatatagctaaatgcagaaccaaacattgtgctaggaccctctatatgcagtccccat |
112 |
Q |
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| T |
12337163 |
gttctcaccatcttcaggcctttctccaagtatcctcaatgcaatatagctaaatgcagaaccaaacattgtgctaggaccctctatatgcagtccccac |
12337262 |
T |
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| Q |
113 |
ccaccatcttcattctgtcatctcatcacaattcaccagtacaactcataagttattaaatttgaatttcatattctattgttttttccccctctcttgg |
212 |
Q |
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| T |
12337263 |
ccaccatcttcattctgtcatctcatcacaattcaccaatacaactcataagttattaaatttgaatttcatattctatagttttttccccctctcttgg |
12337362 |
T |
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| Q |
213 |
tcctattgaggatgataactttctctactgtacagggtcggtccaatggagctgacattaaagcaagggttttaagctcctaaattttttaggtcacata |
312 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12337363 |
tcctattgaggatgataactttctctactgtacagagtcggttcaatggagctgccattaaagcaagggttttaagctcctaaattttttaggtcacata |
12337462 |
T |
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| Q |
313 |
ttaggcctcatcttttcggctttaaatatatcttttacatcatagttcaacccaaacttaagtggtatttaaacggagtcatagttcat |
401 |
Q |
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| T |
12337463 |
ttaggcctcatctttttggctttgaatatattttttacatcatagttcaccccaaactcaagtggtatttaaacggagtcatagttcat |
12337551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 12306508 - 12306621
Alignment:
| Q |
19 |
accatcttcaggcctttgtccaagtatcctcaatgcaatatagctaaatgcagaaccaaacattgtgctaggaccctctatatgcagtccccatccacca |
118 |
Q |
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| T |
12306508 |
accatcttcaggcccttctccaagtattctcaatgcaatatagctcaatgcagatccaaatattgtgctgtgaccctctatatgcaacccccatccacca |
12306607 |
T |
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| Q |
119 |
tcttcattctgtca |
132 |
Q |
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|||| ||||||||| |
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| T |
12306608 |
tctttattctgtca |
12306621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 35184246 - 35184370
Alignment:
| Q |
19 |
accatcttcaggcctttgtccaagtatcctcaatgcaatatagctaaatgcagaaccaaacattgtgctaggaccctctatatgcagtccccatccacca |
118 |
Q |
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|||||||||||| | || |||||||| ||||| |||||||||||| ||||| || ||||||||||||||| | ||||||||||| | ||||||||||||| |
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| T |
35184246 |
accatcttcaggtccttctccaagtagcctcagtgcaatatagctcaatgctgatccaaacattgtgctatgtccctctatatggaatccccatccacca |
35184345 |
T |
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| Q |
119 |
tcttcattctgtcatctcatcacaa |
143 |
Q |
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||||| |||||||| |||||||||| |
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| T |
35184346 |
tcttcgttctgtcacctcatcacaa |
35184370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 22504173 - 22504118
Alignment:
| Q |
74 |
ccaaacattgtgctaggaccctctatatgcagtccccatccaccatcttcattctg |
129 |
Q |
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| T |
22504173 |
ccaaacattgtgctaggcccttctatatgcaatccccaccctccatctttattctg |
22504118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 1942533 - 1942593
Alignment:
| Q |
69 |
cagaaccaaacattgtgctaggaccctctatatgcagtccccatccaccatcttcattctg |
129 |
Q |
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| T |
1942533 |
cagaaccaaacatggtgcttggaccttcaatatgcaaaccccatccaccatccttattctg |
1942593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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