View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20980_low_8 (Length: 405)
Name: NF20980_low_8
Description: NF20980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20980_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 43325854 - 43326198
Alignment:
| Q |
17 |
atgcactataattttggttgctccaccaggaatgaaaactttttaagcatgaaattttttattaaaaactgatgttgatttgttttgaagttcaaatgca |
116 |
Q |
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| T |
43325854 |
atgcactataattttggttgctccaccaggaatgaaaactttttaagcatgaaaatttttattaaaaactgatgttggtttgttttgaagttcaaatgca |
43325953 |
T |
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| Q |
117 |
taaaggtatgacatnnnnnnntaaatcacttttttccatttgggacaattcgagggactaaatggacgttgacttagaagtacatatatacaatgaatga |
216 |
Q |
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| T |
43325954 |
taaaggtatgacataaaaaagtaaatcacttttttccatttgggacaattcgagggactaaatggacgttgacttagaagtagatatatacaatgaatga |
43326053 |
T |
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| Q |
217 |
ttttaaagattatggggtgtcaattttcttttgcatgatttttggttaggcttccctctcttggtcactcatttgtaatgttgtagtcatgttgtgagat |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||||||| ||||| |
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| T |
43326054 |
ttttaaagatcatggggtgtcaattttcttttgcatgatttttggttaggctaccctctcttagtcactaatttgtaatgttgaagacatgttgagagat |
43326153 |
T |
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| Q |
317 |
tcgtaacatttgtagcaagacatggagttcatatgaagggtggtc |
361 |
Q |
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|||||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
43326154 |
tcgtaaaatttgtagcaagaaatggagttcatatgaaggatggtc |
43326198 |
T |
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