View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20981_low_1 (Length: 498)
Name: NF20981_low_1
Description: NF20981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20981_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 151 - 481
Target Start/End: Complemental strand, 31935897 - 31935583
Alignment:
| Q |
151 |
atacacatattggtgtgtgt--aataaaaactgatgtaaatcaagctgagaagttggtatagacagtatacctttggtacttcatcaatttgatttctga |
248 |
Q |
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| T |
31935897 |
atacacatattggtgtgtgtgtaataaaaactgatgtaaatcaagctgagaagttggtatagacggtatacctttggtacttcatcaatttgatttctga |
31935798 |
T |
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| Q |
249 |
gatataataattgtttttatgagaccatcaaaccatacattgaaaacatattcaagttatttaagttgatcaagttatctgatnnnnnnnnnnttagaca |
348 |
Q |
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| T |
31935797 |
gatat-ataattgtttttatgagaccatcgaaccatacattgaaaacatattcaagttatttaagttgatcaagttatctgat-aaaaaaaaattagaca |
31935700 |
T |
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| Q |
349 |
aatattgacatcatcaaatcaaattcaattggattgaatcactcgaattgaactttttagaggaatcaaatatgtaaatgatcaaaggattcaaagaggt |
448 |
Q |
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| T |
31935699 |
aatattgacatcatcaaatcaaattcaattggattgaatcactcgaattgaacttctt----------------taaatgatcaaaggactcaaagaggt |
31935616 |
T |
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| Q |
449 |
agtaatatgttacataatgattagtaaattgat |
481 |
Q |
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| T |
31935615 |
agtaatatgttacataatgattagtaaattgat |
31935583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 31935951 - 31935914
Alignment:
| Q |
93 |
tgttctaacataaatgattcatattaaagatgaatacc |
130 |
Q |
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| T |
31935951 |
tgttctaacataaatgattcatattaaagatgaatacc |
31935914 |
T |
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