View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20981_low_2 (Length: 251)

Name: NF20981_low_2
Description: NF20981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20981_low_2
NF20981_low_2
[»] chr4 (3 HSPs)
chr4 (156-235)||(43916014-43916093)
chr4 (7-80)||(43915865-43915938)
chr4 (39-80)||(43915831-43915872)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 43916014 - 43916093
Alignment:
Q  156 ggcaaatttgtaataaaccttggatctaggcaatatgcgaggatctgacggctgttgactagggttggggggtaaatcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43916014 ggcaaatttgtaataaaccttggatctaggcaatatgcgaggatctgacggctgttgactagggttggggggtaaatcat 43916093  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 43915865 - 43915938
Alignment:
Q  7 agatgaaccaaatcaaagtttnnnnnnngaatcattgcatgagttatattaacagaaaatcctcaaagatgaac 80  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  43915865 agatgaaccaaatcaaagtttaaaaaaagaatcattgcatgagttatattaacagaaaatcctcaaagatgaac 43915938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 43915831 - 43915872
Alignment:
Q  39 cattgcatgagttatattaacagaaaatcctcaaagatgaac 80  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  43915831 cattgcacgagttatattaatagaaaatcctcaaagatgaac 43915872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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