View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20982_high_3 (Length: 442)

Name: NF20982_high_3
Description: NF20982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20982_high_3
NF20982_high_3
[»] chr7 (14 HSPs)
chr7 (1-291)||(25419498-25419788)
chr7 (1-291)||(5767987-5768278)
chr7 (1-253)||(39066831-39067083)
chr7 (72-291)||(47233745-47233964)
chr7 (72-291)||(44393667-44393881)
chr7 (364-429)||(25419354-25419419)
chr7 (367-429)||(47233607-47233669)
chr7 (371-415)||(44393962-44394006)
chr7 (6-44)||(17026582-17026620)
chr7 (6-44)||(39073319-39073357)
chr7 (6-44)||(47140379-47140417)
chr7 (366-423)||(47932806-47932863)
chr7 (114-158)||(47932975-47933019)
chr7 (6-45)||(39068633-39068672)
[»] chr6 (9 HSPs)
chr6 (1-291)||(13433376-13433666)
chr6 (364-429)||(13433232-13433297)
chr6 (168-291)||(16712037-16712155)
chr6 (371-424)||(16711903-16711956)
chr6 (367-429)||(18882913-18882976)
chr6 (6-44)||(18880850-18880888)
chr6 (366-423)||(16857402-16857459)
chr6 (114-158)||(16857246-16857290)
chr6 (366-423)||(10810387-10810444)
[»] chr4 (25 HSPs)
chr4 (1-291)||(2504924-2505214)
chr4 (1-291)||(46092231-46092522)
chr4 (1-291)||(46134756-46135047)
chr4 (75-291)||(53830428-53830644)
chr4 (77-291)||(34737725-34737936)
chr4 (72-291)||(21802896-21803111)
chr4 (72-291)||(2500570-2500786)
chr4 (72-290)||(5430709-5430927)
chr4 (72-253)||(21632733-21632912)
chr4 (72-235)||(20036282-20036446)
chr4 (364-429)||(2504780-2504845)
chr4 (1-72)||(27256659-27256730)
chr4 (367-429)||(34737583-34737645)
chr4 (367-429)||(46092600-46092662)
chr4 (367-425)||(53830294-53830352)
chr4 (1-70)||(26376932-26377001)
chr4 (1-70)||(46140551-46140620)
chr4 (367-429)||(2500431-2500493)
chr4 (367-429)||(21632562-21632623)
chr4 (371-427)||(5431005-5431061)
chr4 (367-415)||(20036533-20036581)
chr4 (1-44)||(51868379-51868422)
chr4 (6-44)||(34738989-34739027)
chr4 (380-425)||(21803198-21803242)
chr4 (114-158)||(43943476-43943520)
[»] chr2 (17 HSPs)
chr2 (1-291)||(7574014-7574304)
chr2 (1-291)||(16668609-16668899)
chr2 (80-288)||(41646633-41646842)
chr2 (151-217)||(43564238-43564304)
chr2 (364-429)||(7573870-7573935)
chr2 (364-429)||(16668465-16668530)
chr2 (151-220)||(29455448-29455517)
chr2 (367-429)||(41646492-41646554)
chr2 (367-425)||(43564421-43564478)
chr2 (367-429)||(29455614-29455680)
chr2 (1-45)||(29455162-29455206)
chr2 (6-45)||(31618576-31618615)
chr2 (6-44)||(29752927-29752965)
chr2 (6-40)||(6414355-6414389)
chr2 (261-291)||(29455527-29455557)
chr2 (6-44)||(40653675-40653713)
chr2 (261-291)||(43564317-43564347)
[»] chr1 (11 HSPs)
chr1 (1-291)||(13786158-13786448)
chr1 (1-291)||(25807694-25807985)
chr1 (80-290)||(22912455-22912662)
chr1 (71-253)||(23725991-23726167)
chr1 (364-429)||(13786527-13786592)
chr1 (364-429)||(25807550-25807615)
chr1 (367-417)||(23725843-23725893)
chr1 (367-406)||(22912341-22912380)
chr1 (367-429)||(39623744-39623807)
chr1 (6-44)||(39621658-39621696)
chr1 (6-41)||(29679061-29679096)
[»] chr5 (9 HSPs)
chr5 (1-291)||(36990971-36991262)
chr5 (72-291)||(21604992-21605209)
chr5 (77-276)||(37301929-37302125)
chr5 (367-429)||(21604856-21604918)
chr5 (367-429)||(37301690-37301752)
chr5 (2-72)||(11381343-11381413)
chr5 (367-429)||(36991342-36991404)
chr5 (1-40)||(10180525-10180564)
chr5 (6-44)||(10180451-10180489)
[»] chr3 (17 HSPs)
chr3 (1-291)||(52349655-52349945)
chr3 (72-291)||(48266265-48266483)
chr3 (72-291)||(35870343-35870562)
chr3 (72-207)||(26215284-26215420)
chr3 (364-429)||(52350024-52350089)
chr3 (367-425)||(35870636-35870694)
chr3 (367-429)||(48266555-48266617)
chr3 (190-291)||(26215432-26215529)
chr3 (371-429)||(26215607-26215665)
chr3 (6-44)||(3744470-3744508)
chr3 (6-43)||(3738554-3738591)
chr3 (366-423)||(54945608-54945665)
chr3 (367-423)||(5884254-5884310)
chr3 (114-158)||(5884423-5884467)
chr3 (114-158)||(54945777-54945821)
chr3 (1-44)||(10176644-10176687)
chr3 (6-44)||(26297681-26297719)
[»] chr8 (18 HSPs)
chr8 (72-253)||(8150455-8150633)
chr8 (72-291)||(10186354-10186569)
chr8 (72-291)||(20171957-20172171)
chr8 (81-235)||(4138333-4138487)
chr8 (151-220)||(918949-919018)
chr8 (174-291)||(11428069-11428182)
chr8 (367-429)||(918775-918837)
chr8 (367-429)||(10186644-10186705)
chr8 (367-429)||(4138607-4138668)
chr8 (371-429)||(11427934-11427992)
chr8 (72-147)||(11428184-11428260)
chr8 (371-415)||(20172251-20172295)
chr8 (1-44)||(14597427-14597470)
chr8 (6-44)||(28841614-28841652)
chr8 (6-44)||(32663991-32664029)
chr8 (6-45)||(11428337-11428376)
chr8 (6-40)||(9083151-9083185)
chr8 (1-33)||(12274297-12274329)
[»] scaffold0516 (2 HSPs)
scaffold0516 (71-253)||(3246-3425)
scaffold0516 (367-417)||(3521-3571)
[»] scaffold0045 (1 HSPs)
scaffold0045 (2-70)||(1266-1334)
[»] scaffold0061 (2 HSPs)
scaffold0061 (6-44)||(46384-46422)
scaffold0061 (4-44)||(54087-54127)
[»] scaffold0017 (2 HSPs)
scaffold0017 (6-44)||(152365-152403)
scaffold0017 (4-44)||(144507-144547)
[»] scaffold0182 (2 HSPs)
scaffold0182 (366-422)||(8705-8761)
scaffold0182 (114-158)||(10171-10215)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 25419788 - 25419498
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25419788 ctctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 25419689  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25419688 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 25419589  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  25419588 tattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 25419498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5768278 - 5767987
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcgg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  5768278 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcag 5768179  T
Q  100 ttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5768178 ttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaatattgaggggttacattttaaaattattc 5768079  T
Q  200 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  5768078 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 5767987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 39067083 - 39066831
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39067083 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 39066984  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39066983 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 39066884  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctca 253  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  39066883 tattcttaatcaatcctcttacacatacaagtttattactataaggctcctca 39066831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 47233964 - 47233745
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    |||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47233964 ttactatctatctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 47233865  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 271  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  47233864 attaaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttataagcttata 47233765  T
Q  272 tatatgttgcttatgttatc 291  Q
    |||||||||||||| |||||    
T  47233764 tatatgttgcttatattatc 47233745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 44393667 - 44393881
Alignment:
Q  72 ttactatcta-tctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaa 170  Q
    |||||||||| |||||||||| |||||  ||  |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  44393667 ttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 44393766  T
Q  171 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttat 270  Q
    || ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||       ||||||| ||    
T  44393767 tagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca---ttttctaagctcat 44393860  T
Q  271 atatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||    
T  44393861 atatatgttgcttatgttatc 44393881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 25419419 - 25419354
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25419419 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 25419354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 47233669 - 47233607
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  47233669 tatttctataacttttcatattctctaatggatattttttctttgatttcaaagacacaggtt 47233607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 44393962 - 44394006
Alignment:
Q  371 tctataatttttcgtattctctaatggatattttttctttgattt 415  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  44393962 tctataatttttcgtattctctaatggatattttttctttcattt 44394006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 17026582 - 17026620
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17026582 attctaagctacactttgcttatgtgtcacctcaccaat 17026620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 39073357 - 39073319
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  39073357 attctaacctacactttgcttatgtgtcacctcaccaat 39073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 47140379 - 47140417
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  47140379 attctaaactacactttgcttatgtgtcacctcaccaat 47140417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 47932863 - 47932806
Alignment:
Q  366 atatttctataatttttcgtattctctaatggatattttttctttgatttcaaataca 423  Q
    ||||||||||||||||| || |||||||||| ||||  |||||||||||||| |||||    
T  47932863 atatttctataattttttgttttctctaatgaatatcctttctttgatttcacataca 47932806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 47933019 - 47932975
Alignment:
Q  114 catttacttcacttcatgcaagttacacaatgaatgaattataat 158  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||    
T  47933019 catttacttcacttcatgcaagttgtacaatgaatgcattataat 47932975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 39068672 - 39068633
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaata 45  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  39068672 attctaagctacactttgcttatatgtcacctcacaaata 39068633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 13433666 - 13433376
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13433666 ctctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 13433567  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13433566 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 13433467  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  13433466 tattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 13433376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 13433297 - 13433232
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13433297 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 13433232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 16712155 - 16712037
Alignment:
Q  168 taatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagct 267  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||   | || ||||| |||||||       |||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatcttacacacac--gt---tcaccataaaactcctcatttttttctaagct 16712061  T
Q  268 tatatatatgttgcttatgttatc 291  Q
     |||||||||||||||||||||||    
T  16712060 catatatatgttgcttatgttatc 16712037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 16711956 - 16711903
Alignment:
Q  371 tctataatttttcgtattctctaatggatattttttctttgatttcaaatacac 424  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  16711956 tctataatttttcgtattctcaaatggatattttttctttcatttcacatacac 16711903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 18882913 - 18882976
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatatt-ttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||| ||||    
T  18882913 tatttctataattttccgtattctcgaatagatattcttttctttgatttcaaatacacgggtt 18882976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 18880850 - 18880888
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18880850 attctaagctacactttgcttatgtgtcacctcaccaat 18880888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 16857402 - 16857459
Alignment:
Q  366 atatttctataatttttcgtattctctaatggatattttttctttgatttcaaataca 423  Q
    ||||||||||||||||| || |||||||||| ||||  |||||||||||||| |||||    
T  16857402 atatttctataattttttgttttctctaatgaatatcctttctttgatttcacataca 16857459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 16857246 - 16857290
Alignment:
Q  114 catttacttcacttcatgcaagttacacaatgaatgaattataat 158  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||    
T  16857246 catttacttcacttcatgcaagttgtacaatgaatgcattataat 16857290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Original strand, 10810387 - 10810444
Alignment:
Q  366 atatttctataatttttcgtattctctaatggatattttttctttgatttcaaataca 423  Q
    ||||||||||||||||| |||||||||||||  |||  ||| |||||||||| |||||    
T  10810387 atatttctataattttttgtattctctaatgagtatcctttatttgatttcacataca 10810444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 2505214 - 2504924
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2505214 ctctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 2505115  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2505114 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 2505015  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  2505014 tattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 2504924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 46092231 - 46092522
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcgg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  46092231 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttcctatctatctttcattttccatcgg 46092330  T
Q  100 ttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattc 199  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46092331 ttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattc 46092430  T
Q  200 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  46092431 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 46092522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 46134756 - 46135047
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcgg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  46134756 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttcctatctatctttcattttccatcgg 46134855  T
Q  100 ttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattc 199  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46134856 ttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattc 46134955  T
Q  200 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  46134956 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 46135047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 75 - 291
Target Start/End: Complemental strand, 53830644 - 53830428
Alignment:
Q  75 ctatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatatt 174  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53830644 ctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatatt 53830545  T
Q  175 gaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatat 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  53830544 gaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatat 53830445  T
Q  275 atgttgcttatgttatc 291  Q
    |||||||||||||||||    
T  53830444 atgttgcttatgttatc 53830428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 77 - 291
Target Start/End: Complemental strand, 34737936 - 34737725
Alignment:
Q  77 atctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattga 176  Q
    ||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||    
T  34737936 atctatctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagttacacaatgaatgcattataatccattttattaacaatga 34737837  T
Q  177 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatat 276  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||       ||||||||||||||||    
T  34737836 ggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaagt---ttactataaagctcctcatttttttctaagcttatatatat 34737740  T
Q  277 gttgcttatgttatc 291  Q
    |||||||||||||||    
T  34737739 gttgcttatgttatc 34737725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 21802896 - 21803111
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    |||||||||||||||||||| | ||| ||| |||||||  | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  21802896 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 21802995  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 271  Q
    ||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||   ||||||||||||||||||       ||||||||||     
T  21802996 attgaggggttacgttttaaaattgttcatattcttaatcaataatcttacacacacaagt---ttactataaagctcctcatttttttctaagcttat- 21803091  T
Q  272 tatatgttgcttatgttatc 291  Q
    ||| ||||||||||||||||    
T  21803092 tatgtgttgcttatgttatc 21803111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 2500786 - 2500570
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    ||||||| |||||||||||| ||||| ||| ||||||  | ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  2500786 ttactatttatctttcatttcccatccgttgcaaaaatacaccatttacttcacttcatgcaagttgcacaatgaatgcattataatccattttattaat 2500687  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 271  Q
    |||| | ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||   ||||||| || ||||       ||||||||| |    
T  2500686 attgtgcggttacattttaaaattatttgtattcttgatcaatcctcttacacacacaagttta---ctataaatctactcatttttttctaagcttaca 2500590  T
Q  272 tatatgttgcttatgttatc 291  Q
    |||||||||||||| |||||    
T  2500589 tatatgttgcttatattatc 2500570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 72 - 290
Target Start/End: Original strand, 5430709 - 5430927
Alignment:
Q  72 ttactatcta-tctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttat--- 167  Q
    |||||||||| |||||||||| |||||  ||  |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||       
T  5430709 ttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 5430808  T
Q  168 taatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagct 267  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||||||| |||||||       |||||||    
T  5430809 taatagtgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaaactcctca-ttttttctaagct 5430904  T
Q  268 tatatatatgttgcttatgttat 290  Q
     ||||||||||||||||||||||    
T  5430905 catatatatgttgcttatgttat 5430927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 72 - 253
Target Start/End: Complemental strand, 21632912 - 21632733
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaa-ctctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaa 170  Q
    |||||||||||||||||||||| ||| ||| |||||| |  | ||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  21632912 ttactatctatctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatgaatgcattatgatccattttattaa 21632813  T
Q  171 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctca 253  Q
    |||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||    
T  21632812 tattgaggggttatgttttaaaattgttcatattcttaatcaatcttcttacacacacaagt---ttactataaagctcctca 21632733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 20036282 - 20036446
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaa-ctctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaa 170  Q
    |||||||||||||||||||| ||||| | |  ||||| | || || ||||||||||||||||||||| || |||||||| |||||||| |||||||||||    
T  20036282 ttactatctatctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagttgcataatgaatgcattataattcattttattaa 20036381  T
Q  171 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 235  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  20036382 tattgagcagttacattttaaaattaatcatattcttaatcaatcctcttacactcacaagttta 20036446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 2504845 - 2504780
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504845 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 2504780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 27256659 - 27256730
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatt 72  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27256659 ctctcattctaaactacactttacttatgtgtcacctcaccaataattcttatttcttatatgaattttatt 27256730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 34737645 - 34737583
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34737645 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 34737583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 46092600 - 46092662
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46092600 tatttctataatttttcgtattctctaatagatattttttctttgatttcaaatacacaggtt 46092662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 53830352 - 53830294
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacaca 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53830352 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacaca 53830294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26376932 - 26377001
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaatttta 70  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26376932 ctctcattataagcaagactttgcttatgtgtcacctcaccaataattcttatttcttatatgaatttta 26377001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 46140620 - 46140551
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaatttta 70  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46140620 ctctcattataagcaagactttgcttatgtgtcacctcaccaataattcttatttcttatatgaatttta 46140551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 2500493 - 2500431
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  2500493 tatttctataatttttcatattctctaatggatattttttctttgatttcacataaacaggtt 2500431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 21632623 - 21632562
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21632623 tatttctataatatttcgtattctctaatggatat-ttttctttgatttcaaatacacaggtt 21632562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 5431005 - 5431061
Alignment:
Q  371 tctataatttttcgtattctctaatggatattttttctttgatttcaaatacacagg 427  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  5431005 tctataatttttcgtattctctaatggatattttttctttcatttcacatacacagg 5431061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 20036533 - 20036581
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgattt 415  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||||    
T  20036533 tatttctataattttccgtattccctaatggattttttttctttgattt 20036581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 51868379 - 51868422
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||    
T  51868379 ctctcattccaagctacactttgcttacgtgtcacctcaccaat 51868422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 34739027 - 34738989
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  34739027 attctaagctacactttgtttatgtgtcacctcaccaat 34738989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 21803198 - 21803242
Alignment:
Q  380 tttcgtattctctaatggatattttttctttgatttcaaatacaca 425  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  21803198 tttcgtattctctaatgaatatttt-tctttgatttcaaatacaca 21803242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 43943476 - 43943520
Alignment:
Q  114 catttacttcacttcatgcaagttacacaatgaatgaattataat 158  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||    
T  43943476 catttacttcacttcatgcaagttgtacaatgaatgcattataat 43943520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 7574304 - 7574014
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7574304 ctctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 7574205  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7574204 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 7574105  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  7574104 tattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 7574014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 16668899 - 16668609
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16668899 ctctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 16668800  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16668799 tacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 16668700  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  16668699 tattcttgatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 16668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 80 - 288
Target Start/End: Complemental strand, 41646842 - 41646633
Alignment:
Q  80 tatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggg 179  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  41646842 tatctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaatgtattttaatccattttattaatattgaggg 41646743  T
Q  180 gttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctca-nnnnnnnctaagcttatatatatgt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  41646742 gttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgt 41646643  T
Q  279 tgcttatgtt 288  Q
    ||||||||||    
T  41646642 tgcttatgtt 41646633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 43564238 - 43564304
Alignment:
Q  151 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43564238 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcct 43564304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 7573935 - 7573870
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7573935 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 7573870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 16668530 - 16668465
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16668530 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 16668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 29455448 - 29455517
Alignment:
Q  151 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 220  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  29455448 attataatccattttattaatatcgaggggttacattttaaaattattcatattcttaattaatcctctt 29455517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 41646554 - 41646492
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41646554 tatttctataatttttcgtattttctaatggatattttttctttgatttcaaatacacaggtt 41646492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 43564421 - 43564478
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacaca 425  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  43564421 tatttctataatttttcgtattctctaatggatattttttattt-atttcaaatacaca 43564478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 29455614 - 29455680
Alignment:
Q  367 tatttctataatttttcgtattctctaatggata----ttttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||    |||||| ||| ||||||||||||| ||||    
T  29455614 tatttctataatttttcgtattctctaatggataattttttttttttttatttcaaatacacgggtt 29455680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29455162 - 29455206
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaata 45  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  29455162 ctctcattataagctatactttgcttatgtgtcacctcaccaata 29455206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 31618615 - 31618576
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaata 45  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  31618615 attctaagctacactttgtttatgtgtcacctcaccaata 31618576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 29752927 - 29752965
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  29752927 attctaaactacactttgcttatgtgtcacctcaccaat 29752965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 6414389 - 6414355
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcac 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  6414389 attctaaactacactttgcttatgtgtcacctcac 6414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 291
Target Start/End: Original strand, 29455527 - 29455557
Alignment:
Q  261 ctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||||    
T  29455527 ctaagcttatatatatgttgcttatgttatc 29455557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 40653713 - 40653675
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  40653713 attctaagttacactttgcttatgtgccacctcaccaat 40653675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 291
Target Start/End: Original strand, 43564317 - 43564347
Alignment:
Q  261 ctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||||    
T  43564317 ctaagcttatatatatgttgcttatgttatc 43564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 13786158 - 13786448
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13786158 ctctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 13786257  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13786258 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 13786357  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  13786358 tattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 13786448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 25807985 - 25807694
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  25807985 ctctcattctaagctacattttgcttatgtgtcatctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcaat 25807886  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25807885 tacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 25807786  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctca-nnnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||||    
T  25807785 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttatatatatgtttcttatgttatc 25807694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 80 - 290
Target Start/End: Complemental strand, 22912662 - 22912455
Alignment:
Q  80 tatctttcattttccatc-ggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgagg 178  Q
    |||||||||||| ||||| |||| || |||| |||||||||||||||||| |||| |||||| |||||||| ||||||| ||||||||||||||| ||||    
T  22912662 tatctttcatttcccatcaggttgcagaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaatat-gagg 22912564  T
Q  179 ggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgt 278  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| | |   ||||||| ||||||||||       ||||||||||||||||||    
T  22912563 agttacattttaaaattattcatattcttaatcaatcctcttacacacacgaat---ttactattaagctcctcatttttttctaagcttatatatatgt 22912467  T
Q  279 tgcttatgttat 290  Q
    ||||||||||||    
T  22912466 tgcttatgttat 22912455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 23726167 - 23725991
Alignment:
Q  71 tttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaa 170  Q
    |||||||||||||||||||||| |||| ||| ||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  23726167 tttactatctatctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataatccattttattaa 23726068  T
Q  171 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctca 253  Q
    |||| |  ||||||||||| ||||||||||||||||||||||||||||||   |||||||||   ||||||||||||||||||    
T  23726067 tattaaacggttacatttt-aaattattcatattcttaatcaatcctctt--gcacacaagt---ttactataaagctcctca 23725991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 13786527 - 13786592
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13786527 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 13786592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 25807615 - 25807550
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25807615 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 25807550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 23725893 - 23725843
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttca 417  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23725893 tatttctataattttttgtattctctaatggatattttttctttgatttca 23725843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 406
Target Start/End: Complemental strand, 22912380 - 22912341
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatatttttt 406  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22912380 tatttctataatttttcgtattctctaatggatatttttt 22912341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 39623744 - 39623807
Alignment:
Q  367 tatttctataatttttcgtattctctaatggata-ttttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||| ||| ||||    
T  39623744 tatttctataattttccgtattctcgaatagatatttttttctttgatttcaaatgcacgggtt 39623807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 39621658 - 39621696
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  39621658 attctaaactacactttgcttatgtgtcacctcaccaat 39621696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 29679061 - 29679096
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcacc 41  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29679061 attctaaactacactttgcttatgtgtcacctcacc 29679096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 36990971 - 36991262
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttctt-atatgaattttatttactatctatctttcattttccatcgg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  36990971 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttcatatgaattttatttactatctatctttcattttccatcag 36991070  T
Q  100 ttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36991071 ttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaatattgaggggttacattttaaaattattc 36991170  T
Q  200 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  36991171 atattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 36991262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 21605209 - 21604992
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    ||||||||||||||||||||||||| || | ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21605209 ttactatctatctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 21605110  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||  ||    
T  21605109 attgaggggttaaattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagct--ta 21605012  T
Q  272 tatatgttgcttatgttatc 291  Q
    ||||||||||||||||||||    
T  21605011 tatatgttgcttatgttatc 21604992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 77 - 276
Target Start/End: Complemental strand, 37302125 - 37301929
Alignment:
Q  77 atctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattga 176  Q
    ||||||||||||||| |||||  || ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||     
T  37302125 atctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaataatgg 37302026  T
Q  177 ggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatat 276  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||| |||||||       ||||||||||||||||    
T  37302025 agggttacattttaaaattattcatattcttaatcaatccacttacacacacaagt---ttactataaaactcctcatttttttctaagcttatatatat 37301929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 21604918 - 21604856
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604918 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 21604856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 37301752 - 37301690
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37301752 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 37301690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 11381343 - 11381413
Alignment:
Q  2 tctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatt 72  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11381343 tctcattataagcaagactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatt 11381413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 36991342 - 36991404
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  36991342 tatttctataattttttgtattctctaatagatattttttctttgatttcaaatacacaggtt 36991404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10180525 - 10180564
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcac 40  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10180525 ctctcattctaagctacactttgcttatgtgtcacttcac 10180564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 10180451 - 10180489
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  10180451 attctaacctacattttgcttatgtgtcacctcaccaat 10180489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 52349655 - 52349945
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcggt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52349655 ctctcattctaagctacattttgcttatgtgtcacctcaccaataattcttatttcttatatgaattttatttactatctatctttcattttccatcagt 52349754  T
Q  101 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgaggggttacattttaaaattattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52349755 tacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattta 52349854  T
Q  201 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  52349855 tattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttatatatatgttgcttatgttatc 52349945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 48266265 - 48266483
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  48266265 ttactatctatctttcattttccatcagttgcaaaaactctccatttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaat 48266363  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  48266364 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttata 48266463  T
Q  272 tatatgttgcttatgttatc 291  Q
    ||||||||||||||||||||    
T  48266464 tatatgttgcttatgttatc 48266483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 35870343 - 35870562
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35870343 ttactatctatctttcattttccatcagttgcgaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 35870442  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 271  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||| ||||||    
T  35870443 attgagaggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaaggtcctcatttttttctaaacttata 35870542  T
Q  272 tatatgttgcttatgttatc 291  Q
    ||||||||||||||||||||    
T  35870543 tatatgttgcttatgttatc 35870562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 26215284 - 26215420
Alignment:
Q  72 ttactatcta-tctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaa 170  Q
    |||||||||| ||||||||||||||||  ||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  26215284 ttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtgttataatccattttattaa 26215383  T
Q  171 tattgaggggttacattttaaaattattcatattctt 207  Q
    ||  |||||||||||||||||||||||||||||||||    
T  26215384 tagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 52350024 - 52350089
Alignment:
Q  364 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350024 taatatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 52350089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 35870636 - 35870694
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacaca 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35870636 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacaca 35870694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 48266555 - 48266617
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48266555 tatttctataatttttcatattctctaatggatattttttctttgatttcaaatacacaggtt 48266617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 26215432 - 26215529
Alignment:
Q  190 aaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgtta 289  Q
    ||||||||||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||       ||||||| |||||||||||||||||||||    
T  26215432 aaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca-ttttttctaagctcatatatatgttgcttatgtta 26215527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 26215607 - 26215665
Alignment:
Q  371 tctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  26215607 tctataatttttcgtattctctaatggatattttttctttcatttcacaaacacaggtt 26215665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 3744508 - 3744470
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  3744508 attctaacctacactttgcttatgtgtcacctcaccaat 3744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 3738591 - 3738554
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaa 43  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3738591 attctgagctacactttgcttatgtgtcacctcaccaa 3738554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 54945665 - 54945608
Alignment:
Q  366 atatttctataatttttcgtattctctaatggatattttttctttgatttcaaataca 423  Q
    ||||||||||||||||| || |||||||||| ||||  |||||||||||||| |||||    
T  54945665 atatttctataattttttgttttctctaatgaatatcctttctttgatttcacataca 54945608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 5884310 - 5884254
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaataca 423  Q
    |||||||||||||||| || |||||||||| ||||  |||||||||||||| |||||    
T  5884310 tatttctataattttttgttttctctaatgaatatcctttctttgatttcacataca 5884254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 5884467 - 5884423
Alignment:
Q  114 catttacttcacttcatgcaagttacacaatgaatgaattataat 158  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||    
T  5884467 catttacttcacttcatgcaagttgtacaatgaatgcattataat 5884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 54945821 - 54945777
Alignment:
Q  114 catttacttcacttcatgcaagttacacaatgaatgaattataat 158  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||    
T  54945821 catttacttcacttcatgcaagttgtacaatgaatgcattataat 54945777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10176687 - 10176644
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||    
T  10176687 ctctcattctaaactacactttacttatgtgtcacctaaccaat 10176644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 26297719 - 26297681
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  26297719 attctaaactacactttgcttatgtgttacctcaccaat 26297681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 72 - 253
Target Start/End: Complemental strand, 8150633 - 8150455
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    |||||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||    
T  8150633 ttactatctatctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgcattataatcaattttattaat 8150534  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctca 253  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  8150533 attgaggggttacattttaaaattattcatattcttaatcagtcctcttacacacacaagt---ttactataaagctcctca 8150455  T

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Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 10186354 - 10186569
Alignment:
Q  72 ttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaat 171  Q
    |||||||||||||||||||| | ||| ||| |||||||  | ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  10186354 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttacacaatgaatgcattataatccattttattaat 10186453  T
Q  172 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 271  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||       | ||||||||     
T  10186454 attgaggggttacattttaaaattgttcatattcttaatcaatcctcttacacacacaagt---ttactataaagctcctcatttttttccaagcttat- 10186549  T
Q  272 tatatgttgcttatgttatc 291  Q
    ||| ||||||||||||||||    
T  10186550 tatgtgttgcttatgttatc 10186569  T

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Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 20171957 - 20172171
Alignment:
Q  72 ttactatcta-tctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaa 170  Q
    |||||||||| |||||||||| |||||  ||  |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  20171957 ttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaa 20172056  T
Q  171 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttat 270  Q
    || ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||       ||||||| ||    
T  20172057 tagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttactataaagctcctca---ttttctaagctcat 20172150  T
Q  271 atatatgttgcttatgttatc 291  Q
    |||||||||||||||||||||    
T  20172151 atatatgttgcttatgttatc 20172171  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 4138333 - 4138487
Alignment:
Q  81 atctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaatattgagggg 180  Q
    ||||||||||| | ||| ||| |||||||  | ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  4138333 atctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatctattttattaatattgagggg 4138432  T
Q  181 ttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 235  Q
    |||| |||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  4138433 ttacgttttaaaattgttcatattcttaatcaagactcttacacacacaagttta 4138487  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 919018 - 918949
Alignment:
Q  151 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  919018 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 918949  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 291
Target Start/End: Complemental strand, 11428182 - 11428069
Alignment:
Q  174 tgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatata 273  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||   |||| |||||||||||||       ||||||| |||||    
T  11428182 tgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacagaagt---ttacgataaagctcctca-ttttttctaagctcatata 11428087  T
Q  274 tatgttgcttatgttatc 291  Q
    ||||||||||||||||||    
T  11428086 tatgttgcttatgttatc 11428069  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 918837 - 918775
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  918837 tatttctataatttttcgtattctctaatggatattttttccttgatttcaaatgcacaggtt 918775  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 10186644 - 10186705
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10186644 tatttctataatatttcgtattctctaatggata-tttttctttgatttcaaatacacaggtt 10186705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 429
Target Start/End: Original strand, 4138607 - 4138668
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  4138607 tatttctataatatttcgtattctctaatggata-tttttcattgatttcaaatacacaggtt 4138668  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 11427992 - 11427934
Alignment:
Q  371 tctataatttttcgtattctctaatggatattttttctttgatttcaaatacacaggtt 429  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  11427992 tctataatttttcgtattctctaatgaatattttttctttcatttcacatacacaggtt 11427934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 11428260 - 11428184
Alignment:
Q  72 ttactatcta-tctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaa 147  Q
    |||||||||| ||||||||||||||||  ||  ||||||| |||||||||||||||||||| |||||||||||||||    
T  11428260 ttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttacacaatgaa 11428184  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 20172251 - 20172295
Alignment:
Q  371 tctataatttttcgtattctctaatggatattttttctttgattt 415  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  20172251 tctataatttttcgtattctctaatggatattttttctttcattt 20172295  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14597470 - 14597427
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  14597470 ctctcattctaagctacactttacttatgtgtcacctcaccaat 14597427  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 28841614 - 28841652
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28841614 attctaagctatactttgcttatgtgtcacctcaccaat 28841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 32663991 - 32664029
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  32663991 attctaaactacactttgcttatgtgtcacctcaccaat 32664029  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 11428376 - 11428337
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaata 45  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  11428376 attctaagctacattttgcttatgtgtcacctcactaata 11428337  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 9083185 - 9083151
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcac 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  9083185 attctaaactacactttgcttatgtgtcacctcac 9083151  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12274297 - 12274329
Alignment:
Q  1 ctctcattctaagctacactttgcttatgtgtc 33  Q
    |||||||| ||||||||||||||||||||||||    
T  12274297 ctctcattataagctacactttgcttatgtgtc 12274329  T

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Target: scaffold0516 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 71 - 253
Target Start/End: Original strand, 3246 - 3425
Alignment:
Q  71 tttactatctatctttcattttccatcggttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgaattataatccattttattaa 170  Q
    |||||||| |||||||||||| ||||| ||| ||||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  3246 tttactatttatctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattgaattataatccattttattaa 3345  T
Q  171 tattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctca 253  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  3346 tattaagcggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagt---ttactataaagctcctca 3425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 3521 - 3571
Alignment:
Q  367 tatttctataatttttcgtattctctaatggatattttttctttgatttca 417  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  3521 tatttctattattttttgtattctttaatggatattttttctttgatttca 3571  T

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Target: scaffold0045 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 1334 - 1266
Alignment:
Q  2 tctcattctaagctacactttgcttatgtgtcacctcaccaataattcttatttcttatatgaatttta 70  Q
    ||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1334 tctcattataagcaagactttgcttatgtgtcacctcaccaataattcttatttcttatatgaatttta 1266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 46422 - 46384
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46422 attctaagctacactttacttatgtgtcacctcaccaat 46384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 54087 - 54127
Alignment:
Q  4 tcattctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  54087 tcattctaaactacactttgcttatgtgtcacctaaccaat 54127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 152365 - 152403
Alignment:
Q  6 attctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  152365 attctaagctacactttacttatgtgtcacctcaccaat 152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 144547 - 144507
Alignment:
Q  4 tcattctaagctacactttgcttatgtgtcacctcaccaat 44  Q
    ||||||||| |||||||||||||||||||||||| ||||||    
T  144547 tcattctaaactacactttgcttatgtgtcacctaaccaat 144507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 422
Target Start/End: Complemental strand, 8761 - 8705
Alignment:
Q  366 atatttctataatttttcgtattctctaatggatattttttctttgatttcaaatac 422  Q
    ||||||||||||||||| || |||||||||| ||||  |||||||||||||| ||||    
T  8761 atatttctataattttttgttttctctaatgaatatcctttctttgatttcacatac 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 10215 - 10171
Alignment:
Q  114 catttacttcacttcatgcaagttacacaatgaatgaattataat 158  Q
    ||||||||||||||||||||||||   ||||||||| ||||||||    
T  10215 catttacttcacttcatgcaagttgtgcaatgaatgcattataat 10171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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