View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20982_high_4 (Length: 394)

Name: NF20982_high_4
Description: NF20982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20982_high_4
NF20982_high_4
[»] chr3 (1 HSPs)
chr3 (67-381)||(34686354-34686662)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 67 - 381
Target Start/End: Original strand, 34686354 - 34686662
Alignment:
Q  67 attgctcaaaagtacatataaaatttgcatgcctaaactacatttttactaatatggnnnnnnnnnnnnattccatcctcaaatatctcactatatgaaa 166  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||  |||||||||    
T  34686354 attgctcaaaagtacatataaaatttgcatgcctaaattacatttttactaatatggtttttgtttt--attccatcctcaaatatctctatatatgaaa 34686451  T
Q  167 ttatagatgtaaggatgttatatccctcagattcttttttcattgtcgttttaaagttcaatgcaacatttagtatgtatgaaacaacattttataaata 266  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  34686452 ttatagatgtaaggatgttatatccctct-attcttttttaattgtcgttttaaagttcaatgcaacatt-agtatgtatgaaacaacatttcataaata 34686549  T
Q  267 ccaaaacaagcaatatatttgttttatggagtatagtatagtatttaacttattatatatgcattcagagaccaaaatgactatca--catagtatagta 364  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||       
T  34686550 ccaaaacaaccaatatatttgttttatggagtatagtatagtatttaacttattatatatgcattcagagaccaaaatgaccatcactcatagtata--- 34686646  T
Q  365 tatatctaacttaccct 381  Q
     ||||||||||||||||    
T  34686647 -atatctaacttaccct 34686662  T

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