View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20982_low_2 (Length: 686)
Name: NF20982_low_2
Description: NF20982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20982_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 36 - 671
Target Start/End: Original strand, 26579663 - 26580309
Alignment:
| Q |
36 |
tagttatatacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctcctaccatccaaa |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26579663 |
tagttatatacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctcctaccatccaaa |
26579762 |
T |
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| Q |
136 |
attcaaaagaaaaatacatgagagttcaaaaatttactttatatagatatagatgtatagtatagtattcacactcagatc----------------gat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26579763 |
attcaaaagaaaaatacatgagagttcaaaaatttactttatatagatatagatgtatagtatagtattcacactcagatccaacgacactcagatcgat |
26579862 |
T |
|
| Q |
220 |
aaagtgtatgtttagattgacaatgaaat-gatagtatcagagtaaattatccaatttcttttaaaaacttttcttcaaagttttaactctgagattttg |
318 |
Q |
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|||||||| ||||||||||||| ||| || ||||| |||||||||| ||||||||||||||||||||||||| || | |||||| ||||||||||||| |
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| T |
26579863 |
aaagtgtaggtttagattgacagtgagattgatagaatcagagtaagttatccaatttcttttaaaaactttatttgagggttttatctctgagattttg |
26579962 |
T |
|
| Q |
319 |
tcaaattcactgtcaatctaaacatacaaaccgacaatcctattatactggtgcagatgatctatactcatattaaaagggagagatttaacaagagaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
26579963 |
tcaaattcactgtcaatctaaacatacaaaccgacaatcctattatactggtgccgatgatctatactcatattaaaagggagagattcaataagagaag |
26580062 |
T |
|
| Q |
419 |
agatatactttcatggccgccgagaagctcaacggcgtgaacaaatcgattatgaagcgaactagtccatcgcattctcggagccctcatgttcctctta |
518 |
Q |
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| T |
26580063 |
agatatactttcatggccgccgagaagctcaacggcgtgaacaaatcgattatgaagcgagctagtccaccgcattcttggagccctcatgttcctctta |
26580162 |
T |
|
| Q |
519 |
ttactttgttgccttggcatcatcattcttgacctcacaaatccacttccaaactcagaatttccaaactgattcaccttctgctgttgttgatgctgat |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26580163 |
ttactttgttgccttggcatcatcattcttgacctcacaaatccatttccaaactcagaatttccaaactgattcaccttctgctgttgt------tgat |
26580256 |
T |
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| Q |
619 |
gctgtagaagatgatgttgatgattcatatattgaaacttttgaggtcttaaa |
671 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
26580257 |
tctgtagaagatgatgctgatgattcatgtattgaaacttttgaggtcttaaa |
26580309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 12344972 - 12344890
Alignment:
| Q |
44 |
tacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctccta |
126 |
Q |
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||||||||| ||| ||||||||| |||| ||| ||||| |||||||||||||| || | ||||||||| ||||||||||||| |
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| T |
12344972 |
tacctgtaagtgagacttgacatgtgctaatgtaagatccttcacatccattagttcaagaactgattttggagtagctccta |
12344890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 509
Target Start/End: Complemental strand, 29258843 - 29258758
Alignment:
| Q |
424 |
tactttcatggccgccgagaagctcaacggcgtgaacaaatcgattatgaagcgaactagtccatcgcattctcggagccctcatg |
509 |
Q |
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| T |
29258843 |
tactttcatggccaccaagaagctcaacagcatgaacaaatctagcatgaagagtacttgtccatcgcattcttggtgctctcatg |
29258758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 29259255 - 29259172
Alignment:
| Q |
43 |
atacctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctccta |
126 |
Q |
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||||||| ||||| || || |||||||||| ||| ||||| ||||||||||| || ||||||||||| || || || ||||||| |
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| T |
29259255 |
atacctgcaaatggctttttacatgagctaatgtgagatccttcacatccatcagttccaaaactgactttggtgttgctccta |
29259172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 6455158 - 6455078
Alignment:
| Q |
45 |
acctgtaaatgactcttgacatgagctagtgttagatctttcacatccattagctccaaaactgatttaggagtagctcct |
125 |
Q |
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|||||||| ||||||||||| || ||||| |||||||| ||||||| ||||| ||| || || ||||| || || |||||| |
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| T |
6455158 |
acctgtaagtgactcttgacgtgtgctagggttagatccttcacattcattaactctaacacagattttggtgttgctcct |
6455078 |
T |
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