View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20982_low_6 (Length: 371)

Name: NF20982_low_6
Description: NF20982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20982_low_6
NF20982_low_6
[»] scaffold0238 (2 HSPs)
scaffold0238 (111-353)||(6011-6253)
scaffold0238 (15-57)||(5914-5956)
[»] chr3 (5 HSPs)
chr3 (111-353)||(30998653-30998895)
chr3 (223-353)||(41052885-41053016)
chr3 (146-208)||(38510125-38510187)
chr3 (146-208)||(53556153-53556214)
chr3 (15-57)||(30998949-30998991)
[»] chr1 (2 HSPs)
chr1 (111-353)||(12605709-12605951)
chr1 (15-57)||(12606007-12606049)
[»] chr2 (8 HSPs)
chr2 (111-353)||(10450959-10451201)
chr2 (146-208)||(22144556-22144618)
chr2 (146-200)||(27561462-27561516)
chr2 (146-200)||(37457900-37457954)
chr2 (225-353)||(37458209-37458342)
chr2 (111-153)||(3081948-3081990)
chr2 (297-351)||(7195402-7195457)
chr2 (146-206)||(7195247-7195306)
[»] chr7 (3 HSPs)
chr7 (223-353)||(21887354-21887485)
chr7 (223-353)||(37478649-37478780)
chr7 (227-353)||(32663382-32663504)
[»] chr4 (2 HSPs)
chr4 (146-200)||(5742385-5742439)
chr4 (146-201)||(1661828-1661882)
[»] chr6 (1 HSPs)
chr6 (239-348)||(22391241-22391355)


Alignment Details
Target: scaffold0238 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 111 - 353
Target Start/End: Original strand, 6011 - 6253
Alignment:
Q  111 aagaaagaattctggggttgtaaggattcgttgatgtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgctat 210  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6011 aagaaacaattctgggattgtaaggattcgttgatgtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgctat 6110  T
Q  211 aaatacgggataagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctctttt 310  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6111 aaatacgggctaagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggtagtagaaatgcacaattagaggtaaagttcttctctttt 6210  T
Q  311 gtctctctcactcatacaacaaaaaggaaaactatgaccatgt 353  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  6211 gtctctctcactcatacaataaaaaggaaaactatgaccatgt 6253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 5914 - 5956
Alignment:
Q  15 cagagaaaaagtcttatgaaccttaacaatatgtaaaccaacg 57  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  5914 cagagaaaaaggcttatgaaccttaacagtatgtaaaccaacg 5956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 111 - 353
Target Start/End: Complemental strand, 30998895 - 30998653
Alignment:
Q  111 aagaaagaattctggggttgtaaggattcgttgatgtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgctat 210  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30998895 aagaaacaattctgacgttgtaaggattcgttgatgtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgctat 30998796  T
Q  211 aaatacgggataagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctctttt 310  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30998795 aaatacgggctaagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggtagtagaaatgcacaattagaggtaaagttcttctctttt 30998696  T
Q  311 gtctctctcactcatacaacaaaaaggaaaactatgaccatgt 353  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  30998695 gtctctctcactcatacaataaaaaggaaaactatgaccatgt 30998653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 223 - 353
Target Start/End: Original strand, 41052885 - 41053016
Alignment:
Q  223 agtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctc-ttttgtctctctcac 321  Q
    ||||||||| ||||| | ||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||    
T  41052885 agtgttaagctgaactacgctttaacaatatgtcatggcttcatttggtagtagaaatgcaaaattagaggtaaagttcttttctttttgtctctctcac 41052984  T
Q  322 tcatacaacaaaaaggaaaactatgaccatgt 353  Q
     ||||||| |||||| ||||| ||||||||||    
T  41052985 acatacaataaaaagaaaaaccatgaccatgt 41053016  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 38510187 - 38510125
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgct 208  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  38510187 gtttgtgaggataaagattcaaatgattgaagttgcagtacaaggtcctataaaaggtttgct 38510125  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 53556214 - 53556153
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgct 208  Q
    ||||||||||| ||| |||||| |||||||||| ||| |||||||| ||||||||||||||||    
T  53556214 gtttgtgaagaaaaacattcaagtgattgaagt-gcagtacaaggtcctataaaaggtttgct 53556153  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 30998991 - 30998949
Alignment:
Q  15 cagagaaaaagtcttatgaaccttaacaatatgtaaaccaacg 57  Q
    |||||||||||  || |||||||||||||||||||||||||||    
T  30998991 cagagaaaaaggtttctgaaccttaacaatatgtaaaccaacg 30998949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 111 - 353
Target Start/End: Complemental strand, 12605951 - 12605709
Alignment:
Q  111 aagaaagaattctggggttgtaaggattcgttgatgtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgctat 210  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12605951 aagaaacaattctggaattgtaaggattcgttgatgtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgctat 12605852  T
Q  211 aaatacgggataagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctctttt 310  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12605851 aaatacgggctaagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggtagtagaaatgcacaattagaggtaaagttcttctctttt 12605752  T
Q  311 gtctctctcactcatacaacaaaaaggaaaactatgaccatgt 353  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  12605751 gtctctctcactcatacaataaaaaggaaaactatgaccatgt 12605709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 12606049 - 12606007
Alignment:
Q  15 cagagaaaaagtcttatgaaccttaacaatatgtaaaccaacg 57  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  12606049 cagagaaaaaggcttatgaaccttaacagtatgtaaaccaacg 12606007  T

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Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 111 - 353
Target Start/End: Original strand, 10450959 - 10451201
Alignment:
Q  111 aagaaagaattctggggttgtaaggattcgttgatgtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgctat 210  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10450959 aagaaacaattatggggttgtaaggattcgttaatgtttgtgaagataaagattcaaatgattgaagttgcactacaagattctataaaaggtttgctat 10451058  T
Q  211 aaatacgggataagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctctttt 310  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  10451059 aaatacgggctaagtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggtagtagaaatgcacaattagaggtaaagttattctctttt 10451158  T
Q  311 gtctctctcactcatacaacaaaaaggaaaactatgaccatgt 353  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  10451159 gtctctctcactcatacaataaaaaggaaaactatgaccatgt 10451201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 22144618 - 22144556
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttgct 208  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22144618 gtttgtgaggataaagattcaaatgattgaagttgcagtacaaggtcctataaaaggtttgct 22144556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 27561462 - 27561516
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaa 200  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  27561462 gtttatgaggataaagattcaaatgattgaagttgcagtacaaggtcctataaaa 27561516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 37457900 - 37457954
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaa 200  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||| ||||||||    
T  37457900 gtttgtgaggataaagattcaaatgaatgaagttgcagtacaaggtcctataaaa 37457954  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 353
Target Start/End: Original strand, 37458209 - 37458342
Alignment:
Q  225 tgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagt----agaaatgcacaattagaggtaaagttcttctc-ttttgtctctctc 319  Q
    ||||||||||||  ||||||||| | |||| ||||||| ||||||| |||    ||||||||||||| | |||||||  ||||| | |||| |||||| |    
T  37458209 tgttaagttgaaataagctttaacaatatgccatggctccatttggtagttgaaagaaatgcacaataataggtaaaaatcttcactttttatctctccc 37458308  T
Q  320 actcatacaacaaaaaggaaaactatgaccatgt 353  Q
    |||||||||| |||||| |||||  |||||||||    
T  37458309 actcatacaataaaaagaaaaaccttgaccatgt 37458342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 3081948 - 3081990
Alignment:
Q  111 aagaaagaattctggggttgtaaggattcgttgatgtttgtga 153  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  3081948 aagaaacaattctgggtttgtaaggattcgttgatgtttgtga 3081990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 7195402 - 7195457
Alignment:
Q  297 agttcttctctttt-gtctctctcactcatacaacaaaaaggaaaactatgaccat 351  Q
    |||||||||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  7195402 agttcttctctttttgtgtctctcactcatacaataaaaagtaaaaccatgaccat 7195457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 7195247 - 7195306
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaaggtttg 206  Q
    ||||||||||| ||| ||||||||| || || |||||||||| ||| ||||||||||||||    
T  7195247 gtttgtgaaga-aaatattcaaatgtttaaaattgcactacagggtcctataaaaggtttg 7195306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 21887485 - 21887354
Alignment:
Q  223 agtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctc-ttttgtctctctcac 321  Q
    ||||||||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||||    
T  21887485 agtgttaagctgaactaagctttaacaatatgtcatggcttcatttggtagtagaaatgcaaaattagaggtaaagttcttttcattttgtctctctcac 21887386  T
Q  322 tcatacaacaaaaaggaaaactatgaccatgt 353  Q
     ||||||| |||||| ||||| ||||||||||    
T  21887385 acatacaataaaaagaaaaaccatgaccatgt 21887354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 37478780 - 37478649
Alignment:
Q  223 agtgttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctc-ttttgtctctctcac 321  Q
    ||||||||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||| || || |||||||||||||||    
T  37478780 agtgttaagctgaactaagctttaacaatatgtcatggcttcatttggtagtagaaatgcaaaattagaggtaaagttattttctttttgtctctctcac 37478681  T
Q  322 tcatacaacaaaaaggaaaactatgaccatgt 353  Q
     ||||||| | |||| ||||| ||||||||||    
T  37478680 acatacaatacaaagaaaaaccatgaccatgt 37478649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 353
Target Start/End: Original strand, 32663382 - 32663504
Alignment:
Q  227 ttaagttgaaccaagctttaatagtatgtcatggcttcatttggcagtagaaatgcacaattagaggtaaagttcttctcttttgtctctctcactcata 326  Q
    ||||||||||| ||||||||| | |||||||||||||||||| | |||| |||||||||||||||  |||||||||    ||||||||||  ||||||||    
T  32663382 ttaagttgaactaagctttaacaatatgtcatggcttcattttgtagtataaatgcacaattagacctaaagttct----ttttgtctcttacactcata 32663477  T
Q  327 caacaaaaaggaaaactatgaccatgt 353  Q
    ||| |||||| ||||| ||||||||||    
T  32663478 caataaaaagaaaaaccatgaccatgt 32663504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 5742439 - 5742385
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaa 200  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  5742439 gtttgtgaggataaagattcaaatgattgaagttgcagtacaaggtcctataaaa 5742385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 1661882 - 1661828
Alignment:
Q  146 gtttgtgaagataaagattcaaatgattgaagttgcactacaaggttctataaaag 201  Q
    |||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  1661882 gtttatgaagataaacattcaaatgattgaag-tgcagtacaaggttctataaaag 1661828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 22391355 - 22391241
Alignment:
Q  239 aagctttaatagtatgtcatggcttcatttggcagt----agaaatgcacaattagaggtaaagttcttctc-ttttgtctctctcactcatacaacaaa 333  Q
    ||||||||| | |||||||||||||||||||  |||    ||||||||||||||| ||||||| | ||| || |||||||||| |||| ||||||| |||    
T  22391355 aagctttaacaatatgtcatggcttcatttgatagtacaaagaaatgcacaattataggtaaaatgcttatctttttgtctctttcacgcatacaataaa 22391256  T
Q  334 aaggaaaactatgac 348  Q
    ||| ||||| |||||    
T  22391255 aagaaaaaccatgac 22391241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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