View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20982_low_9 (Length: 311)

Name: NF20982_low_9
Description: NF20982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20982_low_9
NF20982_low_9
[»] chr7 (11 HSPs)
chr7 (17-182)||(40634351-40634516)
chr7 (175-304)||(5768250-5768380)
chr7 (180-304)||(39067055-39067180)
chr7 (174-304)||(25419760-25419878)
chr7 (175-228)||(39073320-39073373)
chr7 (178-297)||(39063893-39064001)
chr7 (178-228)||(17026569-17026619)
chr7 (180-253)||(39068610-39068683)
chr7 (178-228)||(47140366-47140416)
chr7 (191-228)||(25419746-25419783)
chr7 (175-228)||(47936427-47936480)
[»] chr1 (5 HSPs)
chr1 (178-304)||(25807957-25808083)
chr1 (175-304)||(13786057-13786186)
chr1 (178-228)||(39621645-39621695)
chr1 (180-226)||(29679050-29679096)
chr1 (191-228)||(13786163-13786200)
[»] chr6 (6 HSPs)
chr6 (175-304)||(13433638-13433767)
chr6 (180-228)||(18877365-18877413)
chr6 (248-304)||(18877422-18877478)
chr6 (175-242)||(8643568-8643635)
chr6 (191-228)||(13433624-13433661)
chr6 (187-228)||(18880846-18880887)
[»] chr3 (15 HSPs)
chr3 (175-304)||(52349554-52349683)
chr3 (178-228)||(3744471-3744521)
chr3 (248-297)||(33519166-33519215)
chr3 (175-228)||(346604-346657)
chr3 (248-297)||(10176666-10176715)
chr3 (175-219)||(33519233-33519277)
chr3 (182-228)||(10176723-10176769)
chr3 (178-228)||(26215155-26215205)
chr3 (182-254)||(26297655-26297728)
chr3 (182-228)||(3738554-3738600)
chr3 (182-228)||(5885645-5885691)
chr3 (175-244)||(39822098-39822167)
chr3 (191-228)||(52349660-52349697)
chr3 (175-228)||(54949228-54949281)
chr3 (175-254)||(10179356-10179436)
[»] chr2 (14 HSPs)
chr2 (175-304)||(7574276-7574405)
chr2 (175-304)||(16668871-16668988)
chr2 (175-228)||(22990029-22990082)
chr2 (175-228)||(37904095-37904148)
chr2 (178-248)||(29455077-29455148)
chr2 (175-253)||(37777730-37777808)
chr2 (178-244)||(3245036-3245102)
chr2 (182-225)||(6414355-6414398)
chr2 (178-248)||(31618557-31618628)
chr2 (187-253)||(22989147-22989213)
chr2 (178-228)||(29752914-29752964)
chr2 (175-253)||(40652753-40652831)
chr2 (191-228)||(7574262-7574299)
chr2 (191-228)||(16668857-16668894)
[»] chr5 (7 HSPs)
chr5 (180-304)||(36990874-36990999)
chr5 (175-228)||(10180435-10180488)
chr5 (173-248)||(11381252-11381328)
chr5 (178-228)||(37302208-37302258)
chr5 (248-304)||(10180497-10180553)
chr5 (178-245)||(21605269-21605336)
chr5 (184-228)||(11386776-11386820)
[»] chr4 (16 HSPs)
chr4 (192-304)||(46092146-46092259)
chr4 (192-304)||(46134671-46134784)
chr4 (178-304)||(2505186-2505300)
chr4 (175-248)||(26376844-26376918)
chr4 (248-297)||(27256631-27256680)
chr4 (248-299)||(51868351-51868402)
chr4 (182-248)||(46140634-46140701)
chr4 (175-228)||(34738019-34738072)
chr4 (180-228)||(51868294-51868342)
chr4 (185-228)||(27256579-27256622)
chr4 (182-228)||(21632990-21633036)
chr4 (191-228)||(2505172-2505209)
chr4 (175-228)||(21802765-21802818)
chr4 (175-228)||(43942124-43942177)
chr4 (184-228)||(26382345-26382389)
chr4 (178-222)||(53830735-53830779)
[»] scaffold0045 (1 HSPs)
scaffold0045 (175-248)||(1349-1423)
[»] scaffold0316 (1 HSPs)
scaffold0316 (175-228)||(5495-5548)
[»] scaffold0061 (1 HSPs)
scaffold0061 (175-254)||(46359-46438)
[»] scaffold0017 (1 HSPs)
scaffold0017 (175-254)||(152349-152428)
[»] chr8 (12 HSPs)
chr8 (175-225)||(11428342-11428392)
chr8 (175-234)||(12274209-12274268)
chr8 (248-297)||(14597449-14597498)
chr8 (181-228)||(32663981-32664028)
chr8 (175-228)||(10186223-10186276)
chr8 (175-228)||(28841598-28841651)
chr8 (178-250)||(32207843-32207915)
chr8 (182-225)||(9083151-9083194)
chr8 (175-242)||(21566201-21566268)
chr8 (182-225)||(31686159-31686202)
chr8 (174-228)||(14597507-14597561)
chr8 (175-228)||(4138186-4138239)
[»] scaffold0098 (1 HSPs)
scaffold0098 (182-228)||(46074-46120)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 40634351 - 40634516
Alignment:
Q  17 ataataatagttggcaaaaatgtatgcaatctatctaatttatctttgatgtgcttttttgcagtgaaaaggaaatgtatatcgatggtgtttgacagta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40634351 ataataatagttggcaaaaatgtatgcaatctatctaatttatctttgatgtgctttttttcagtgaaaaggaaatgtatatcgatggtgtttgacagta 40634450  T
Q  117 taaggcaatatcttgcaattctagaagcattatttaattttgggagaccaaccgtggaatctatat 182  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  40634451 taaggcaatatcttgcaattccagaagcattatttaattttgggagaccaaccgtggtatatatat 40634516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 5768380 - 5768250
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttatatgcatt 273  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5768380 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactatctctttatatgcatt 5768281  T
Q  274 ctctctcattctaagctacactttgcctatg 304  Q
    |||||||||||||||||||||||||| ||||    
T  5768280 ctctctcattctaagctacactttgcttatg 5768250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 180 - 304
Target Start/End: Complemental strand, 39067180 - 39067055
Alignment:
Q  180 tatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttatatgcattctctc 278  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  39067180 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccccctttctaactatttttctaactatctctttatatgcattctctc 39067081  T
Q  279 tcattctaagctacactttgcctatg 304  Q
    ||||||||||||||||||||| ||||    
T  39067080 tcattctaagctacactttgcttatg 39067055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 25419878 - 25419760
Alignment:
Q  174 aatctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcatt 273  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||| |||||||    
T  25419878 aatctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaa------------ctatctctttacatgcatt 25419791  T
Q  274 ctctctcattctaagctacactttgcctatg 304  Q
    |||||||||||||||||||| ||||| ||||    
T  25419790 ctctctcattctaagctacattttgcttatg 25419760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 39073373 - 39073320
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  39073373 atctatatatacatgtattctaacctacactttgcttatgtgtcacctcaccaa 39073320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 39064001 - 39063893
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa--catcccttttctaactatttttctaactatctctttatatgcattct 275  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||  | |||||||             |||||||| |||||| |||||||||    
T  39064001 tatatatacatgtattctaacctacattttgcttatgtgtcatcttaccaatgcctcccttt-------------ctaactatttctttacatgcattct 39063915  T
Q  276 ctctcattctaagctacacttt 297  Q
    ||||||||||||||||||||||    
T  39063914 ctctcattctaagctacacttt 39063893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 17026569 - 17026619
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||| ||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  17026569 tatacatacatgtattctaagctacactttgcttatgtgtcacctcaccaa 17026619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 39068683 - 39068610
Alignment:
Q  180 tatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttcta 253  Q
    |||||| ||||||||||| ||||| ||| ||||| ||||||||||| || | |||||||||||||  |||||||    
T  39068683 tatataaatgtattctaagctacactttgcttatatgtcacctcacaaataccccttttctaacttattttcta 39068610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 47140366 - 47140416
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||| || |||||||| ||||| ||| ||||||||||||||||||||    
T  47140366 tatatatatatatattctaaactacactttgcttatgtgtcacctcaccaa 47140416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 25419783 - 25419746
Alignment:
Q  191 attctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  25419783 attctaagctacattttgcttatgtgtcacctcaccaa 25419746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 47936480 - 47936427
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||| ||||| ||| ||||  ||||||| ||||||    
T  47936480 atctatatatacatgtattctaagctacactttacttacatgtcaccacaccaa 47936427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 178 - 304
Target Start/End: Complemental strand, 25808083 - 25807957
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattctct 277  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25808083 tatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattctct 25807984  T
Q  278 ctcattctaagctacactttgcctatg 304  Q
    |||||||||||||||| ||||| ||||    
T  25807983 ctcattctaagctacattttgcttatg 25807957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 13786057 - 13786186
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattc 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13786057 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttacatgcattc 13786156  T
Q  275 tctctcattctaagctacactttgcctatg 304  Q
    ||||||||||||||||||| ||||| ||||    
T  13786157 tctctcattctaagctacattttgcttatg 13786186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 39621645 - 39621695
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  39621645 tatatatacatgtattctaaactacactttgcttatgtgtcacctcaccaa 39621695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 29679050 - 29679096
Alignment:
Q  180 tatatacatgtattctaacctacatttttcttatgtgtcacctcacc 226  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  29679050 tatatacatgtattctaaactacactttgcttatgtgtcacctcacc 29679096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 13786163 - 13786200
Alignment:
Q  191 attctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  13786163 attctaagctacattttgcttatgtgtcacctcaccaa 13786200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 13433767 - 13433638
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattc 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13433767 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttacatgcattc 13433668  T
Q  275 tctctcattctaagctacactttgcctatg 304  Q
    ||||||||||||||||||| ||||| ||||    
T  13433667 tctctcattctaagctacattttgcttatg 13433638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 18877365 - 18877413
Alignment:
Q  180 tatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  18877365 tatatacatgtattctaacctacattttgcttaggtgtcaccttaccaa 18877413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 18877422 - 18877478
Alignment:
Q  248 tttctaactatctctttatatgcattctctctcattctaagctacactttgcctatg 304  Q
    ||||||||||| |||||| ||||||||||||| |||||| |||||||||||| ||||    
T  18877422 tttctaactatttctttacatgcattctctcttattctaggctacactttgcttatg 18877478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 8643635 - 8643568
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaa 242  Q
    ||||||||||||||||||||||| ||||||||| ||||  ||||||||||| ||   |||||||||||    
T  8643635 atctatatatacatgtattctaagctacattttgcttacatgtcacctcacaaatgccccttttctaa 8643568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 13433661 - 13433624
Alignment:
Q  191 attctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  13433661 attctaagctacattttgcttatgtgtcacctcaccaa 13433624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 18880846 - 18880887
Alignment:
Q  187 atgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||    
T  18880846 atgtattctaagctacactttgcttatgtgtcacctcaccaa 18880887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 52349554 - 52349683
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattc 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52349554 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttacatgcattc 52349653  T
Q  275 tctctcattctaagctacactttgcctatg 304  Q
    ||||||||||||||||||| ||||| ||||    
T  52349654 tctctcattctaagctacattttgcttatg 52349683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 3744521 - 3744471
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3744521 tatatatacatgtattctaacctacactttgcttatgtgtcacctcaccaa 3744471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 33519215 - 33519166
Alignment:
Q  248 tttctaactatctctttatatgcattctctctcattctaagctacacttt 297  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  33519215 tttctaactatttctttacatgcattctctctcattctaagctacacttt 33519166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 346604 - 346657
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  346604 atctctatatacatgtattctaaactacattttgcttatgtgtcatctcaccaa 346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 10176715 - 10176666
Alignment:
Q  248 tttctaactatctctttatatgcattctctctcattctaagctacacttt 297  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||||||    
T  10176715 tttctaattatctctttgtatgcattctctctcattctaaactacacttt 10176666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 33519277 - 33519233
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtca 219  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  33519277 atctatatatacatgtattctaacctacatattgcttatgtgtca 33519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 10176769 - 10176723
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||    
T  10176769 tatacatgtattctaaactacatttttcctatgtgtcaccttaccaa 10176723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 26215155 - 26215205
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||||||| ||||||||| ||||||||| || |||||||    
T  26215155 tatatatacatgtattctaaactacattttacttatgtgttacttcaccaa 26215205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 26297728 - 26297655
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcaccaa-catcccttttctaactatttttctaa 254  Q
    |||||||||||||||| ||||| ||| ||||||||| ||||||||||   |||| |||||||||| ||||||||    
T  26297728 tatacatgtattctaaactacactttgcttatgtgttacctcaccaattttcccctttctaactaattttctaa 26297655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 3738600 - 3738554
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||| | ||||| ||| ||||||||||||||||||||    
T  3738600 tatacatgtattctgagctacactttgcttatgtgtcacctcaccaa 3738554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 5885691 - 5885645
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||||||||||||| ||||  |||||| |||||||    
T  5885691 tatacatgtattctaacctacattttgcttacatgtcacttcaccaa 5885645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 39822167 - 39822098
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaact 244  Q
    ||||||||||||||||||||||| ||||| ||| ||||  ||||| ||||| ||   |||||||||||||    
T  39822167 atctatatatacatgtattctaagctacactttgcttacatgtcatctcacaaatgccccttttctaact 39822098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Original strand, 52349660 - 52349697
Alignment:
Q  191 attctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  52349660 attctaagctacattttgcttatgtgtcacctcaccaa 52349697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 54949281 - 54949228
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||| ||||| ||| ||||  ||||||| ||||||    
T  54949281 atctatatatacatgtattctaagctacactttacttacatgtcaccacaccaa 54949228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 10179436 - 10179356
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa-catcccttttctaactatttttctaa 254  Q
    |||| |||||||||||||||||| ||||| ||| ||||  ||||||| ||||||    |||||||||||||| ||||||||    
T  10179436 atctctatatacatgtattctaaactacactttgcttacatgtcaccacaccaatgcccccttttctaactaattttctaa 10179356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 7574405 - 7574276
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattc 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7574405 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttacatgcattc 7574306  T
Q  275 tctctcattctaagctacactttgcctatg 304  Q
    ||||||||||||||||||| ||||| ||||    
T  7574305 tctctcattctaagctacattttgcttatg 7574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 16668988 - 16668871
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattc 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||| ||||||||    
T  16668988 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaa------------ctatctctttacatgcattc 16668901  T
Q  275 tctctcattctaagctacactttgcctatg 304  Q
    ||||||||||||||||||| ||||| ||||    
T  16668900 tctctcattctaagctacattttgcttatg 16668871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 22990082 - 22990029
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  22990082 atctatatatacatgtattctaacgtacattttgcttatgtgtcacctcaccaa 22990029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 37904148 - 37904095
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  37904148 atctatatatacatgtattctaagctacatttttcctatgtgtcacctcaccaa 37904095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 29455077 - 29455148
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatccct-tttctaactattt 248  Q
    |||||||| ||||||||||| ||||||||||| |||||||||| ||||||| |||||| |||||||||||||    
T  29455077 tatatatatatgtattctaagctacatttttcctatgtgtcacttcaccaatatccctctttctaactattt 29455148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 37777730 - 37777808
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttcta 253  Q
    ||||||||||||||||||||||||||||| ||| ||||  ||||||||||||||   ||| |||||||||| |||||||    
T  37777730 atctatatatacatgtattctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttcta 37777808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 3245036 - 3245102
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaact 244  Q
    |||||||||||||||||||| ||||| ||| ||||  ||||||||||| ||  ||||||||||||||    
T  3245036 tatatatacatgtattctaaactacactttgcttacatgtcacctcacaaatgtcccttttctaact 3245102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 6414398 - 6414355
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcac 225  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||    
T  6414398 tatacatgtattctaaactacactttgcttatgtgtcacctcac 6414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 31618628 - 31618557
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacat-cccttttctaactattt 248  Q
    |||||||| || |||||||| ||||| |||  ||||||||||||||||||| || ||| |||||||||||||    
T  31618628 tatatatatatatattctaagctacactttgtttatgtgtcacctcaccaatatccccctttctaactattt 31618557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 22989213 - 22989147
Alignment:
Q  187 atgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttcta 253  Q
    ||||||||||||||||| ||| ||||  ||||||||||||||   ||| |||||||||| |||||||    
T  22989213 atgtattctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaattttcta 22989147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 29752914 - 29752964
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||| || |||||||| ||||| ||| ||||||||||||||||||||    
T  29752914 tatatatatatatattctaaactacactttgcttatgtgtcacctcaccaa 29752964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 40652831 - 40652753
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttcta 253  Q
    |||| |||||||||||||||||| ||||| ||| ||||  ||||||||||| ||   |||||||||||||  |||||||    
T  40652831 atctctatatacatgtattctaagctacactttccttacatgtcacctcacaaatgccccttttctaacttattttcta 40652753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 7574299 - 7574262
Alignment:
Q  191 attctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  7574299 attctaagctacattttgcttatgtgtcacctcaccaa 7574262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 16668894 - 16668857
Alignment:
Q  191 attctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  16668894 attctaagctacattttgcttatgtgtcacctcaccaa 16668857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 180 - 304
Target Start/End: Original strand, 36990874 - 36990999
Alignment:
Q  180 tatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttatatgcattctctc 278  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  36990874 tatatacatgtattctaacctacatttttcctatgtgtcacctcacaaacatccccctttctaactatttttctaactatctctttatatgcattctctc 36990973  T
Q  279 tcattctaagctacactttgcctatg 304  Q
    ||||||||||||||||||||| ||||    
T  36990974 tcattctaagctacactttgcttatg 36990999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 10180435 - 10180488
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10180435 atctatatatacatgtattctaacctacattttgcttatgtgtcacctcaccaa 10180488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 11381252 - 11381328
Alignment:
Q  173 gaatctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacat-cccttttctaactattt 248  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||| ||| |||||||||||||    
T  11381252 gaatctatatatacatgtattctaacctacattttgcctatgtgtaacctcacaaacatccccctttctaactattt 11381328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 37302258 - 37302208
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||||||||||||||||| | |||||||||||| |||||    
T  37302258 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 37302208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 10180497 - 10180553
Alignment:
Q  248 tttctaactatctctttatatgcattctctctcattctaagctacactttgcctatg 304  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| ||||    
T  10180497 tttctaattatttctttacatgtattctctctcattctaagctacactttgcttatg 10180553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 21605336 - 21605269
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaacta 245  Q
    |||||||| || |||||||| ||||||||||| |||||||||||| ||||| | ||| ||||||||||    
T  21605336 tatatatatatatattctaagctacatttttcctatgtgtcaccttaccaataccccctttctaacta 21605269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 11386776 - 11386820
Alignment:
Q  184 tacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||| ||||||||| ||||  ||||||||||||||    
T  11386776 tacatgtattctaagctacattttccttacatgtcacctcaccaa 11386820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 46092146 - 46092259
Alignment:
Q  192 ttctaacctacatttttcttatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttatatgcattctctctcattctaagct 290  Q
    |||||||||||||||||| ||||||||||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46092146 ttctaacctacatttttcctatgtgtcacctcacaaacatccccctttcaaactatttttctaactatctctttatatgcattctctctcattctaagct 46092245  T
Q  291 acactttgcctatg 304  Q
    ||||||||| ||||    
T  46092246 acactttgcttatg 46092259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 46134671 - 46134784
Alignment:
Q  192 ttctaacctacatttttcttatgtgtcacctcaccaacatccct-tttctaactatttttctaactatctctttatatgcattctctctcattctaagct 290  Q
    |||||||||||||||||| ||||||||||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46134671 ttctaacctacatttttcctatgtgtcacctcacaaacatccccctttcaaactatttttctaactatctctttatatgcattctctctcattctaagct 46134770  T
Q  291 acactttgcctatg 304  Q
    ||||||||| ||||    
T  46134771 acactttgcttatg 46134784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 304
Target Start/End: Complemental strand, 2505300 - 2505186
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaactatctctttatatgcattctct 277  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||| |||||||||||    
T  2505300 tatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatcccttttctaa------------ctatctctttacatgcattctct 2505213  T
Q  278 ctcattctaagctacactttgcctatg 304  Q
    |||||||||||||||| ||||| ||||    
T  2505212 ctcattctaagctacattttgcttatg 2505186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 26376844 - 26376918
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacat-cccttttctaactattt 248  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||| ||| |||||||||||||    
T  26376844 atctatatatacatgtattctaacctacattttacctatgtgtaacctcacaaacatccccctttctaactattt 26376918  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 27256631 - 27256680
Alignment:
Q  248 tttctaactatctctttatatgcattctctctcattctaagctacacttt 297  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27256631 tttctaactatctctttatatgcattctctctcattctaaactacacttt 27256680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 51868351 - 51868402
Alignment:
Q  248 tttctaactatctctttatatgcattctctctcattctaagctacactttgc 299  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  51868351 tttctaactatttctttatatgcattctctctcattccaagctacactttgc 51868402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 46140701 - 46140634
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcaccaacat-cccttttctaactattt 248  Q
    |||||||||||||||||||||||||| | ||||||| ||||||| ||||| ||| |||||||||||||    
T  46140701 tatacatgtattctaacctacattttacctatgtgtaacctcacaaacatccccctttctaactattt 46140634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 34738072 - 34738019
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||| |||||    
T  34738072 atctctatatacatgtattctaacctacattttgcatatgtgtcaccttaccaa 34738019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 51868294 - 51868342
Alignment:
Q  180 tatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  51868294 tatatacatgtattctaacatacattttgcttatgtgtcaccttaccaa 51868342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 27256579 - 27256622
Alignment:
Q  185 acatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  27256579 acatgtattctaacctacatttttcctatgtgtcaccttaccaa 27256622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 21633036 - 21632990
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||| ||||||||| | |||||||||||| |||||    
T  21633036 tatacatgtattctaagctacattttgcctatgtgtcaccttaccaa 21632990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 2505209 - 2505172
Alignment:
Q  191 attctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  2505209 attctaagctacattttgcttatgtgtcacctcaccaa 2505172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 21802765 - 21802818
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||| |||||||||||||||||| ||||||||  | |||||||||||| |||||    
T  21802765 atctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 21802818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 43942124 - 43942177
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||| |||||||||||||||||| ||||||||| ||||  |||||| |||||||    
T  43942124 atctctatatacatgtattctaatctacattttgcttacatgtcacttcaccaa 43942177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 26382345 - 26382389
Alignment:
Q  184 tacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||| ||||||||| ||||  ||||||||||||||    
T  26382345 tacatgtattctaagctacattttccttacatgtcacctcaccaa 26382389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 53830779 - 53830735
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacct 222  Q
    |||||||| || |||||||| ||||||||||| ||||||||||||    
T  53830779 tatatatatatatattctaagctacatttttcctatgtgtcacct 53830735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 1423 - 1349
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacat-cccttttctaactattt 248  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||| ||| |||||||||||||    
T  1423 atctatatatacatgtattctaacctacattttgcctatgtgtaacctcacaaacatccccctttctaactattt 1349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 5548 - 5495
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  5548 atctatatatacatgtattctaacctacatttttcctatgtgtcaccttaccaa 5495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 46438 - 46359
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaa 254  Q
    |||||| ||| |||||||||||| ||||| ||| ||||||||||||||||||||  |||| |||||||||| ||||||||    
T  46438 atctatctatgcatgtattctaagctacactttacttatgtgtcacctcaccaatttcccctttctaactaattttctaa 46359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 152349 - 152428
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactatttttctaa 254  Q
    |||||| ||| |||||||||||| ||||| ||| ||||||||||||||||||||  |||| |||||||||| ||||||||    
T  152349 atctatctatgcatgtattctaagctacactttacttatgtgtcacctcaccaatttcccctttctaactaattttctaa 152428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 11428392 - 11428342
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcac 225  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  11428392 atctatatatacatgtattctaagctacattttgcttatgtgtcacctcac 11428342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 12274209 - 12274268
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatccc 234  Q
    |||||||||||||||||| ||||  ||||||||  |||||||||||||||||||||||||    
T  12274209 atctatatatacatgtatgctaagttacattttgtttatgtgtcacctcaccaacatccc 12274268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 14597498 - 14597449
Alignment:
Q  248 tttctaactatctctttatatgcattctctctcattctaagctacacttt 297  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||    
T  14597498 tttctaactatctctttatatatgttctctctcattctaagctacacttt 14597449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 32663981 - 32664028
Alignment:
Q  181 atatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaa 32664028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 10186223 - 10186276
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||||||||||||||||||| ||||||||  | |||||||||||| |||||    
T  10186223 atctatatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 10186276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 28841598 - 28841651
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||||| ||||||||||||||| ||| | ||| ||||||||||||||||||||    
T  28841598 atctatagatacatgtattctaagctatactttgcttatgtgtcacctcaccaa 28841651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 32207843 - 32207915
Alignment:
Q  178 tatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaactattttt 250  Q
    |||||| ||||||||||||||||||| ||| ||||  ||||||||||||||   ||| |||||||||| ||||    
T  32207843 tatatacacatgtattctaacctacactttgcttacatgtcacctcaccaattccccctttctaactaatttt 32207915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 9083194 - 9083151
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcac 225  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||    
T  9083194 tatacatgtattctaaactacactttgcttatgtgtcacctcac 9083151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 21566268 - 21566201
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaacatcccttttctaa 242  Q
    ||||||||||||||||||||||||||||| ||| ||||  ||||| ||||| ||   |||||||||||    
T  21566268 atctatatatacatgtattctaacctacactttgcttacatgtcatctcacaaatgccccttttctaa 21566201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 31686159 - 31686202
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcac 225  Q
    |||||||||||||||| |||||| || |||||||||||||||||    
T  31686159 tatacatgtattctaaactacatattgcttatgtgtcacctcac 31686202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 14597561 - 14597507
Alignment:
Q  174 aatctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    ||||| |||||||||||||||||| ||||||||| | ||| |||||||| |||||    
T  14597561 aatctctatatacatgtattctaagctacattttgcctatatgtcaccttaccaa 14597507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 4138186 - 4138239
Alignment:
Q  175 atctatatatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||| |||||||||||||||||| ||||||||  | |||||||||||| |||||    
T  4138186 atctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 4138239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 46074 - 46120
Alignment:
Q  182 tatacatgtattctaacctacatttttcttatgtgtcacctcaccaa 228  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||||||    
T  46074 tatacatgtattctaagctacattttgcttatatatcacctcaccaa 46120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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