View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_11 (Length: 506)
Name: NF20983_high_11
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 39734041 - 39734377
Alignment:
| Q |
23 |
ttcaccttcgaccgaactccagattacgaagactcta-ccctaagcagagtagggttgacacacagnnnnnnnntactaatgaataatagaaaaatatgg |
121 |
Q |
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| T |
39734041 |
ttcaccttcgactgaacttcggattacgaagactcttgccctaggcagagtagggtttacacacagaaaaaaaatactaatgaataatagaaaaatatgg |
39734140 |
T |
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| Q |
122 |
atacctacctatacatgtagatgtctcgaccaggagccaaacgacaattacagaggccacaagttcggagaaagtgaggtgtactatgtatgacatcatg |
221 |
Q |
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| T |
39734141 |
atacctacctatacatgtagatgtctcgaccaggagccaaacgacaattacagaggccacaagttcggagaaagtgaggtgtactatgtatgacatcatg |
39734240 |
T |
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| Q |
222 |
ggcactcacactcaaaggattaataatattgttagtgtgtgaagggaacatgactgcactacccactaaacgttcatcagacaccgttaattcagtttga |
321 |
Q |
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| T |
39734241 |
ggcactcgcactcaaaggattaataatattgttagtgtgtgaagggaacatgactgcactacccactaaacgttcatcagacaccgttaatttactttga |
39734340 |
T |
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| Q |
322 |
atgtgtgtttctgttcccatcacaaccgtatgtggat |
358 |
Q |
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| T |
39734341 |
atgtgtgtttctgttcccatcacaaccgtatgtggat |
39734377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 356 - 499
Target Start/End: Original strand, 39734405 - 39734548
Alignment:
| Q |
356 |
gatcatcatggtgtggatgtggctgcagaggattctgatgagacatcactgattgttcttcatgatgggattctaagttgttggtttgatcaggtgcttg |
455 |
Q |
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| T |
39734405 |
gatcatcatggtgtggatgtggctgcagaggattatgatgagacatcactgattctttttcatgatgggattctaagttgttggtttgatcatgtgcttg |
39734504 |
T |
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| Q |
456 |
catgtccacggataaaccaccactcatgcttcttgttcttctca |
499 |
Q |
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| T |
39734505 |
catgtccacggataaaccaccactcatgcttcttgttcttctca |
39734548 |
T |
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