View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_13 (Length: 484)
Name: NF20983_high_13
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_13 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Original strand, 43973583 - 43974055
Alignment:
| Q |
12 |
tttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973583 |
tttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggttt |
43973682 |
T |
|
| Q |
112 |
ctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttgg |
211 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973683 |
ctttggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttgg |
43973782 |
T |
|
| Q |
212 |
tggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973783 |
tggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtca |
43973882 |
T |
|
| Q |
312 |
ttcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973883 |
ttcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatc |
43973982 |
T |
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| Q |
412 |
gagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgct |
484 |
Q |
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| T |
43973983 |
gagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgct |
43974055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 8952145 - 8952456
Alignment:
| Q |
15 |
cttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtttctt |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
8952145 |
cttttagttctgtctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacatgttcatgctttttctcgcaaaggtggtttctt |
8952244 |
T |
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| Q |
115 |
tggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttggtgg |
214 |
Q |
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| T |
8952245 |
tggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttaatggaaaa-actttgttagtgtttttaggctcaaaacttggtgg |
8952343 |
T |
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| Q |
215 |
tctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattc |
314 |
Q |
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| T |
8952344 |
tctagtcaatggataggaaattctggatctgatttacaaatggaaaatcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattc |
8952443 |
T |
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| Q |
315 |
ctgtcattgaaaa |
327 |
Q |
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| T |
8952444 |
ctatcaatgaaaa |
8952456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Original strand, 8952458 - 8952513
Alignment:
| Q |
363 |
accatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttc |
418 |
Q |
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| T |
8952458 |
accatgtcatgatttgtgctgaaagtagttcaacacaagtaaaagcattgagtttc |
8952513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 482
Target Start/End: Complemental strand, 43565019 - 43564549
Alignment:
| Q |
12 |
tttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggttt |
111 |
Q |
| |
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||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||||| | ||||| |||| || ||||||||||||||||||||| |
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| T |
43565019 |
tttctttcggttctttctctgaaatatgcaaaccctctgaatcaaatgctccaccttcaatccttcaaaaagttcttgatttttctcacaaaggtggttt |
43564920 |
T |
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| Q |
112 |
ctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttgg |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||| ||| |||| ||||||||||| ||| |
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| T |
43564919 |
ctttggattctctcatgaaaccccgtctgatagattgatgaattcattaggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaacgtgg |
43564820 |
T |
|
| Q |
212 |
tggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtca |
311 |
Q |
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||||| | ||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564819 |
tggtccactcaatgggtaggaaaatctggttctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtca |
43564720 |
T |
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| Q |
312 |
ttcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatc |
411 |
Q |
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||||| | ||||||||| |||||||||| || ||| |||||||||| |||||||||| |||||||||||||||||||| ||||| | ||| || ||| |
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| T |
43564719 |
ttcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgtgctgaaagtggttcaaccaaggtggtagaatc |
43564620 |
T |
|
| Q |
412 |
gagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtg |
482 |
Q |
| |
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|||||| |||| ||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| |
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| T |
43564619 |
tagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtg |
43564549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 484
Target Start/End: Complemental strand, 36432974 - 36432502
Alignment:
| Q |
12 |
tttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggttt |
111 |
Q |
| |
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||||||| ||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||| ||| | ||||||| | |||||||||||||||||||||| |
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| T |
36432974 |
tttctttcagttcattctcttctatatgtaaaccctctgagtcaaatgcaccaccttcactcgttgaccgtgttctttctttttctcacaaaggtggttt |
36432875 |
T |
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| Q |
112 |
ctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttgg |
211 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||| ||||| || ||||||||||| |||| | | ||||||||||| |||||||||||||||||||| |
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| T |
36432874 |
ctttggattctccaatgaaaccccatctgatagattcatgaattcattaggtagtttcaatggtagaaactttgtcagtatttttaggttcaaaacttgg |
36432775 |
T |
|
| Q |
212 |
tggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtca |
311 |
Q |
| |
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||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| ||| |
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| T |
36432774 |
tggtctactcaatggataggaagatctggttctgatttgcaaatggaaactcaatggattctttttgagattcctgaaatcagatcctatgctgtgatca |
36432675 |
T |
|
| Q |
312 |
ttcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatc |
411 |
Q |
| |
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||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |||||| | |||||||||| |
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| T |
36432674 |
ttcctatcattgaaaacggttttaggtctgcacttcatcctggttctgatgaccattttatgatttgtgctgagagtggttcaacaaaggtgaaagcatt |
36432575 |
T |
|
| Q |
412 |
gagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgct |
484 |
Q |
| |
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||||||| |||| ||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||| |
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| T |
36432574 |
gagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgct |
36432502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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