View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20983_high_2 (Length: 677)
Name: NF20983_high_2
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 41296914 - 41296607
Alignment:
| Q |
1 |
aaaactaagagtttaataaactatatatactatgaaataaagttttctttatacaattattcaacggtatttcactagtatattattctatctctgtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41296914 |
aaaactaagagtttaataaactatatatcctatgaaataaagttttctttatacaattattcaacggtatttcactagtatattattctatctctgtttc |
41296815 |
T |
|
| Q |
101 |
ataannnnnnnnataaatatcctaaaaagatatacttttaatttccggtatagttttaattgatttttctaattgtacnnnnnnnnnnnnnnnn--gaaa |
198 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
41296814 |
ataattttttttataaatatcttaaaaagatatacttttaat------------tttaattgatttttttaattgtacttttttttttttctttctgaaa |
41296727 |
T |
|
| Q |
199 |
taactaattgtactctcttgttaatattatgtatacgactctcaaatttttaatttttaatttacacttatgataagaaaattcatcaacagtatactat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41296726 |
gaactaattgtactctcttgttaatattatgtataccactctcaaattttttatttttaatttacacttatgataagaaaattcatcaacagtatactat |
41296627 |
T |
|
| Q |
299 |
agtaaaattccgttatttct |
318 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41296626 |
agtaaaattccgttatttct |
41296607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 372 - 616
Target Start/End: Complemental strand, 41295098 - 41294859
Alignment:
| Q |
372 |
aatctttttaaaacggtcgaatgctataatttgaagatttcatattagttttaaaaatacctcaacaaaatatttacacacacattatctattaccgatc |
471 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41295098 |
aatctttttgaaacggtcgaatgctataatttgaagatttcatattagttttaaaaatacctcaacaaaatatttacacacacattatctacgaccgatc |
41294999 |
T |
|
| Q |
472 |
aaaattgacgtccacagtaggtgccacgcagcaaagtgcggatgatctttgttgtagtatgactaattttcataagagtatagtgttgtacttgtaaaga |
571 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
41294998 |
aaaattgatacccaaagtaggtgccacgcagcagaatgcggatgatctttgtcggagtatgactaattttcataagagtagagtgttgtacctgcaaaga |
41294899 |
T |
|
| Q |
572 |
cactctaatctaacactcaaatgtgtgaggtttgagagggcttta |
616 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41294898 |
cact-----ctaacactcaagtgtgtgaggtttgagagggcttta |
41294859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University