View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_high_20 (Length: 422)

Name: NF20983_high_20
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_high_20
NF20983_high_20
[»] chr7 (8 HSPs)
chr7 (26-406)||(39458211-39458591)
chr7 (353-405)||(39437000-39437052)
chr7 (353-403)||(39423980-39424030)
chr7 (26-60)||(5833056-5833090)
chr7 (26-56)||(44941430-44941460)
chr7 (26-55)||(26816682-26816711)
chr7 (12-56)||(16537553-16537597)
chr7 (12-56)||(16628065-16628109)
[»] chr5 (4 HSPs)
chr5 (12-56)||(11017176-11017220)
chr5 (13-56)||(27545174-27545217)
chr5 (26-55)||(2642781-2642810)
chr5 (26-59)||(41417777-41417810)
[»] chr4 (7 HSPs)
chr4 (12-56)||(16995785-16995829)
chr4 (12-58)||(8027412-8027458)
chr4 (26-56)||(20096287-20096317)
chr4 (26-56)||(50442764-50442794)
chr4 (26-58)||(8495001-8495033)
chr4 (12-52)||(32006500-32006540)
chr4 (28-56)||(33758821-33758849)
[»] chr3 (4 HSPs)
chr3 (26-58)||(35126284-35126316)
chr3 (12-56)||(3755339-3755383)
chr3 (26-58)||(10922323-10922355)
chr3 (26-58)||(25016366-25016398)
[»] chr2 (4 HSPs)
chr2 (26-56)||(27152367-27152397)
chr2 (12-56)||(3197096-3197140)
chr2 (26-58)||(31156827-31156859)
chr2 (26-58)||(45032707-45032739)
[»] chr1 (7 HSPs)
chr1 (26-56)||(19396208-19396238)
chr1 (28-58)||(46579664-46579694)
chr1 (27-55)||(12212310-12212338)
chr1 (26-58)||(12852217-12852249)
chr1 (26-58)||(24631853-24631885)
chr1 (26-54)||(41972749-41972777)
chr1 (12-56)||(41974761-41974805)
[»] chr8 (2 HSPs)
chr8 (26-54)||(18942932-18942960)
chr8 (26-58)||(23816804-23816836)
[»] chr6 (1 HSPs)
chr6 (12-56)||(30639443-30639487)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 26 - 406
Target Start/End: Complemental strand, 39458591 - 39458211
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagattttcctagtttgggttcaaaccccgaccacacnnnnnnnngatatagatataactagaataataaaa 125  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  39458591 gttggtagggataatgcataatatatgcaagattttcctggtttgggttcaaaccccgaccacacaaaaaaaagatatagatataactagaataataaaa 39458492  T
Q  126 agtccaacccnnnnnnnntctatattctgtttatatattgttataaaatatacttttgnnnnnnngttgcacaagttatataatatattgtttttnnnnn 225  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||          
T  39458491 agtccaacccaaaaaaaatctatattctgtttatatattgttataaaatatacttttgtttttttgttgcacaagttatataatatattgttttaaaaaa 39458392  T
Q  226 nnnnnngttatagaatatattgttacacaccaatatataaaaggaatactgttatagatgcaatctataatctattatccttttgtgttttatttattcc 325  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39458391 aaaaaagttatagaatatattgttacacaccaatatataaaaggaatactgttatagatgcaatctataatctattatctttttgtgttttatttattcc 39458292  T
Q  326 nnnnnnnnaaaagaacccttgtatgttttattaaacaaaatatactagattttggctcaaaatatattttaggtttagatc 406  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458291 ttttttttaaaagaacccttgtatgttttattaaacaaaatatactagattttggctcaaaatatattttaggtttagatc 39458211  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 39437000 - 39437052
Alignment:
Q  353 ttattaaacaaaatatactagattttggctcaaaatatattttaggtttagat 405  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39437000 ttattgaacaaaatttactagattttagctcaaaatatattttaggtttagat 39437052  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 39423980 - 39424030
Alignment:
Q  353 ttattaaacaaaatatactagattttggctcaaaatatattttaggtttag 403  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  39423980 ttattaaacaaaatatacgagattttagctgaaaatatattttaggtttag 39424030  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 5833056 - 5833090
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagattt 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  5833056 gttggtagggataatgcataatatatgcaatattt 5833090  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 44941460 - 44941430
Alignment:
Q  26 gttggtagggataatgcataatatatgcaag 56  Q
    |||||||||||||||||||||||||||||||    
T  44941460 gttggtagggataatgcataatatatgcaag 44941430  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 26816711 - 26816682
Alignment:
Q  26 gttggtagggataatgcataatatatgcaa 55  Q
    ||||||||||||||||||||||||||||||    
T  26816711 gttggtagggataatgcataatatatgcaa 26816682  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 16537597 - 16537553
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||| |  |||||||||||||||||||||||||| ||||    
T  16537597 gtgagtttagctcagttggtagggataatgcataatatatacaag 16537553  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 16628065 - 16628109
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||| |  |||||||||||||||||||||||||| ||||    
T  16628065 gtgagtttagctcagttggtagggataatgcataatatatacaag 16628109  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 11017176 - 11017220
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||| |  |||||||||||||||||||||||||||||||    
T  11017176 gtgagtttagctcagttggtagggataatgcataatatatgcaag 11017220  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 27545217 - 27545174
Alignment:
Q  13 tgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||||  ||||||||||| |||||||||||||||||||    
T  27545217 tgagtttaggtcggttggtagggacaatgcataatatatgcaag 27545174  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 2642810 - 2642781
Alignment:
Q  26 gttggtagggataatgcataatatatgcaa 55  Q
    ||||||||||||||||||||||||||||||    
T  2642810 gttggtagggataatgcataatatatgcaa 2642781  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 41417777 - 41417810
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagatt 59  Q
    |||||||||||||||| |||||||||||||||||    
T  41417777 gttggtagggataatgtataatatatgcaagatt 41417810  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 16995785 - 16995829
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||    
T  16995785 gtgagtttaggtaagttggtagggacaatgcataatatatgcaag 16995829  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 8027458 - 8027412
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaagat 58  Q
    |||||||||| |  ||||||| |||||||||||||||||||||||||    
T  8027458 gtgagtttagctcagttggtaaggataatgcataatatatgcaagat 8027412  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 20096317 - 20096287
Alignment:
Q  26 gttggtagggataatgcataatatatgcaag 56  Q
    |||||||||||||||||||||||||||||||    
T  20096317 gttggtagggataatgcataatatatgcaag 20096287  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 50442794 - 50442764
Alignment:
Q  26 gttggtagggataatgcataatatatgcaag 56  Q
    |||||||||||||||||||||||||||||||    
T  50442794 gttggtagggataatgcataatatatgcaag 50442764  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 8495001 - 8495033
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    ||||||||||| |||||||||||||||||||||    
T  8495001 gttggtagggacaatgcataatatatgcaagat 8495033  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 32006500 - 32006540
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatg 52  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  32006500 gtgagtttagctcagttggtagggataatgcataatatatg 32006540  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 33758849 - 33758821
Alignment:
Q  28 tggtagggataatgcataatatatgcaag 56  Q
    |||||||||||||||||||||||||||||    
T  33758849 tggtagggataatgcataatatatgcaag 33758821  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 35126316 - 35126284
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    |||||||||||||||||||||||||||||||||    
T  35126316 gttggtagggataatgcataatatatgcaagat 35126284  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 3755339 - 3755383
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||| |  ||||||||||| |||||||||||||||||||    
T  3755339 gtgagtttagctcggttggtagggacaatgcataatatatgcaag 3755383  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 10922355 - 10922323
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    ||||||||||| |||||||||||||||||||||    
T  10922355 gttggtagggacaatgcataatatatgcaagat 10922323  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 25016366 - 25016398
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    |||| ||||||||||||||||||||||||||||    
T  25016366 gttgatagggataatgcataatatatgcaagat 25016398  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 27152367 - 27152397
Alignment:
Q  26 gttggtagggataatgcataatatatgcaag 56  Q
    |||||||||||||||||||||||||||||||    
T  27152367 gttggtagggataatgcataatatatgcaag 27152397  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3197140 - 3197096
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||| |  ||||||||||| |||||||||||||||||||    
T  3197140 gtgagtttagctcagttggtagggacaatgcataatatatgcaag 3197096  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 31156827 - 31156859
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    ||||||||||||||||||||||||||| |||||    
T  31156827 gttggtagggataatgcataatatatgtaagat 31156859  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 45032707 - 45032739
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    ||||||||||| |||||||||||||||||||||    
T  45032707 gttggtagggacaatgcataatatatgcaagat 45032739  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 19396238 - 19396208
Alignment:
Q  26 gttggtagggataatgcataatatatgcaag 56  Q
    |||||||||||||||||||||||||||||||    
T  19396238 gttggtagggataatgcataatatatgcaag 19396208  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 46579694 - 46579664
Alignment:
Q  28 tggtagggataatgcataatatatgcaagat 58  Q
    |||||||||||||||||||||||||||||||    
T  46579694 tggtagggataatgcataatatatgcaagat 46579664  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 12212310 - 12212338
Alignment:
Q  27 ttggtagggataatgcataatatatgcaa 55  Q
    |||||||||||||||||||||||||||||    
T  12212310 ttggtagggataatgcataatatatgcaa 12212338  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 12852249 - 12852217
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    ||||||||||||||||||||||||||| |||||    
T  12852249 gttggtagggataatgcataatatatgtaagat 12852217  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 24631853 - 24631885
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    ||||||| |||||||||||||||||||||||||    
T  24631853 gttggtaaggataatgcataatatatgcaagat 24631885  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 41972777 - 41972749
Alignment:
Q  26 gttggtagggataatgcataatatatgca 54  Q
    |||||||||||||||||||||||||||||    
T  41972777 gttggtagggataatgcataatatatgca 41972749  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 41974761 - 41974805
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||| |  |||| ||||||||||||||||||||||||||    
T  41974761 gtgagtttagttcagttgatagggataatgcataatatatgcaag 41974805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 18942932 - 18942960
Alignment:
Q  26 gttggtagggataatgcataatatatgca 54  Q
    |||||||||||||||||||||||||||||    
T  18942932 gttggtagggataatgcataatatatgca 18942960  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 23816804 - 23816836
Alignment:
Q  26 gttggtagggataatgcataatatatgcaagat 58  Q
    ||||||| |||||||||||||||||||||||||    
T  23816804 gttggtaaggataatgcataatatatgcaagat 23816836  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 30639487 - 30639443
Alignment:
Q  12 gtgagtttaggtgcgttggtagggataatgcataatatatgcaag 56  Q
    |||||||||| |  ||||||||| |||||||||||||||||||||    
T  30639487 gtgagtttagctcagttggtaggaataatgcataatatatgcaag 30639443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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