View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_22 (Length: 410)
Name: NF20983_high_22
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 5807274 - 5806886
Alignment:
| Q |
12 |
acagagcaacagaggaaaattcattggataagttgggacgaattagggagagcaaaaggaaaaggaggtctcggttttagaggattcaacgagttcaaca |
111 |
Q |
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| T |
5807274 |
acagagcaacagaggaaaattcattggataagttgggacaaattagggagagcaaaaggaaaaggaggtctcggttttagaggattcaacgagttcaaca |
5807175 |
T |
|
| Q |
112 |
aagctctcttaggaaagcaatggtggcggctgatgtccactgaacactctctcctttcatgggtgtttaagagtaggtactttccgagaacaagtttttt |
211 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5807174 |
aagctctcttatgaaagcaatggtggcggctgatgtccaatgaacactctctcctttcatgggtgtttaagagtaggtactttccgagaacaagtttttt |
5807075 |
T |
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| Q |
212 |
gaaggcacgtagtggttatcagcctagttatgcttggagaagtttgtgtaatgcaaaatcaataattgatcttggttt-caggtggtcaattggaaacgg |
310 |
Q |
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| T |
5807074 |
gaaggcacgtagtggttatcagcctagttatgcttggagaagcttgtgtaatgcaaaatcaataattgatcttggtttgcaggtggtcaattggaaacgg |
5806975 |
T |
|
| Q |
311 |
gcaacaagttagaatatggaaggacccttggcttcctgagttaccaagcttcaaggtttggagtccagtgcgcaaccttgatgatgatg |
399 |
Q |
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| T |
5806974 |
gcaacaagttagaatatggaaggacccttggcttcctgagttaccaagcttcaaggtttggagtccagtgcgcaaccttgatgaagatg |
5806886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 39487491 - 39487856
Alignment:
| Q |
14 |
agagcaacagaggaaaattcattggataagttgggacgaattagggagagcaaaaggaaaaggaggtctcggttttagaggattcaacgagttcaacaaa |
113 |
Q |
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| T |
39487491 |
agagcaacaaaggaaaattcactggatgagttgggatcggttaggaagagcaaaaagcaaaggaggacttggcttcagaggcttcagtgattttaacaag |
39487590 |
T |
|
| Q |
114 |
gctctcttaggaaagcaatggtggcggctgatgtccactgaacactctctcctttcatgggtgtttaagagtaggtactttccgagaacaagttttttga |
213 |
Q |
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|| || |||| |||||||| ||||| || ||| || |||||||| |||||||| ||||||| ||||||| ||||||| | ||| || |||||||| |
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| T |
39487591 |
gcgcttctagggaagcaatgttggcgactcatgaacaacgaacactccctcctttctcgggtgttcaagagtatgtactttgccagatcatgttttttgg |
39487690 |
T |
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| Q |
214 |
aggcacgtagtggttatcagcctagttatgcttggagaagtttgtgtaatgcaaaatcaataattgatcttggtttcaggtggtcaattggaaacgggca |
313 |
Q |
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| T |
39487691 |
atgctcaaattgactaccagcccagctatgcttggcgcagtttgatgaatgctaaatctgtgattgatctcggatggagatggtcgattggtaatgggca |
39487790 |
T |
|
| Q |
314 |
acaagttagaatatggaaggacccttggcttcctgagttaccaagcttcaaggtttggagtccagt |
379 |
Q |
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| T |
39487791 |
acaagttaaaatctggaaagacccttggcttcctgaactgtcgagcttcaaggtgtggagcccagt |
39487856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 367
Target Start/End: Original strand, 46033612 - 46033966
Alignment:
| Q |
12 |
acagagcaacagaggaaaattcattggataagttgggacgaattagggagagcaaaaggaaaaggaggtctcggttttagaggattcaacgagttcaaca |
111 |
Q |
| |
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||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||| | |||||||| || || || ||||| |||| || || |||| |
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| T |
46033612 |
acagagcaacaaaggaaaattcactggatgagttgggatcggttaggaagagcaaaaagcaaaggaggacttggcttcagaggcttcagtgattttaaca |
46033711 |
T |
|
| Q |
112 |
aagctctcttaggaaagcaatggtggcggctgatgtccactgaacactctctcctttcatgggtgtttaagagtaggtactttccgagaacaagtttttt |
211 |
Q |
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| || || |||| |||||||| ||||| || ||| || |||||||| |||||||| ||||||| ||||||||||||||| | ||| || ||||||| |
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| T |
46033712 |
aggcacttctagggaagcaatgttggcgactcatgaacaacgaacactccctcctttctcgggtgttcaagagtaggtactttgccagatcatgtttttt |
46033811 |
T |
|
| Q |
212 |
gaaggcacgtagtggttatcagcctagttatgcttggagaagtttgtgtaatgcaaaatcaataattgatcttggtttcaggtggtcaattggaaacggg |
311 |
Q |
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| | || | | ||| | ||||| || ||||||||| | |||||| ||||| ||||| |||||||||| || | || ||||| ||||| || ||| |
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| T |
46033812 |
ggatgctcaaattggctgccagcccagctatgcttggtgtagtttgatgaatgctaaatctgtaattgatctcggatggagatggtcgattggtaatggg |
46033911 |
T |
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| Q |
312 |
caacaagttagaatatggaaggacccttggcttcctgagttaccaagcttcaaggt |
367 |
Q |
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||| |||||| ||| ||||| |||| |||||||||||| | ||||||||||||| |
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| T |
46033912 |
caa-aagttaaaatttggaaagacctttggcttcctgaactgtcaagcttcaaggt |
46033966 |
T |
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