View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_23 (Length: 409)
Name: NF20983_high_23
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 40013437 - 40013819
Alignment:
| Q |
17 |
aatacctatttagcttggtataaataagagtgtaaagtgtttttggcattatatatggttctagtcccatgcagatgctataacattatggaagaggaat |
116 |
Q |
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| T |
40013437 |
aatacctatttagcttggtataaataagagtgtaaagtgtttttggcattatatatggttctagtcccatgcagatgctataacattatggaagaggaat |
40013536 |
T |
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| Q |
117 |
taattggttgcatgtaatgtttgagagaaaaatacagagaaaccaaccaatttggctttattcattgaattgacattatttgcttaacacctcattagca |
216 |
Q |
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| T |
40013537 |
taattggttgcatgtaatgtttgagagaaaaatacagagaaaccaaccaatttggctttattcattgaattgacattatttgcttaacacctcattagcg |
40013636 |
T |
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| Q |
217 |
caataaattgagattataattgagtttaattattgatgttgtgtagcataataagttaattagtgtagtcactttcataattgtaatgtgtgcaaaagat |
316 |
Q |
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| T |
40013637 |
caataaattgagattataattgagtttaattattgatgttgtgtagcataataag----ttagtgtagtcactttcataattgtaatgtgtgcaaaagat |
40013732 |
T |
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| Q |
317 |
aaaaatgttacctaattaaacattgaaaagaagttacttgcttgattggattacacaataaaaagagcaatttaatagcctttgata |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40013733 |
aaaaatgttacctaattaaacattgaaaagaagttacttgcttgattggattacacaataaaaagagcaatttaatagcctctgata |
40013819 |
T |
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