View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_26 (Length: 365)
Name: NF20983_high_26
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 25265122 - 25265332
Alignment:
| Q |
16 |
aatttggactctagaatttgaacgtgcattttacaagcttggtttataggacgcattcaatttacctcgatgaaattttaaaatgatgatgtaagaatat |
115 |
Q |
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| T |
25265122 |
aatttggactctagaatttgaacgtgcattttacaagcttggtttataggacgcattcaatttacctcgatgaaattttaaaatgatgttgtaagaacat |
25265221 |
T |
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| Q |
116 |
gttcttcttatttgatcaatatagttctaagtagtgactgagatagacaatatcttggtgag------tggatgaactcgatgaataagttaatttgatt |
209 |
Q |
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| T |
25265222 |
gttctccttatttggtcaatatagttctaagtagtgaccaaaatagacaatatcttggtgagtgtgtatggatgaactcgatgaataagttaatttggtt |
25265321 |
T |
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| Q |
210 |
catccatgatc |
220 |
Q |
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||| |||||| |
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| T |
25265322 |
tatctatgatc |
25265332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 16109645 - 16109595
Alignment:
| Q |
299 |
agtaggtaatatacttctgtttgccatattaattttcttatatttgctaac |
349 |
Q |
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| T |
16109645 |
agtaggtaatatacttctgtttgccatattaattttcttatatttgctaac |
16109595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 16325922 - 16325970
Alignment:
| Q |
299 |
agtaggtaatatacttctgtttgccatattaattttcttatatttgctaac |
349 |
Q |
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| T |
16325922 |
agtaggtaatatactcctgtttgccatattaattttc--atatttgctaac |
16325970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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