View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_28 (Length: 345)
Name: NF20983_high_28
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 335
Target Start/End: Complemental strand, 24247187 - 24246873
Alignment:
| Q |
21 |
aaggaaacacaaatcgcatagtattgttaataataatttcactctaaaagccttaactatgataaccaaagataattaacatttttctaaataggcaaac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247187 |
aaggaaacacaaatcgcatagtattgttaataataatttcactctaaaagccttaactatgataaccaaagataattaacatttttctaaataggcaaac |
24247088 |
T |
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| Q |
121 |
taacaattctgtacaaacttgtgcagaataataaaaggagaaatttatgttatcatttaaaaacagattcattagattacagaagttctcagtttcagag |
220 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24247087 |
taacaattctggacaaacttgtgcataataataaaaggagaaatttatgttatcatttaaaaacagattcattagattacagaagttctcagtttcagag |
24246988 |
T |
|
| Q |
221 |
agacagaatccactccgaagtgtttaaaagtactcaagacattaattagtcattaaactgaaatctagtactagaaaactcacttgatcatcatcaagtt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24246987 |
agacagaatccactccgaagtgtttaaaagtactcaagacattaattagtcattaaactgaaatctagtactagaaaactcacttgatcatcatcaagtt |
24246888 |
T |
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| Q |
321 |
gtcttccttcctatg |
335 |
Q |
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||||||||||||||| |
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| T |
24246887 |
gtcttccttcctatg |
24246873 |
T |
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