View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_32 (Length: 326)
Name: NF20983_high_32
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 3745233 - 3745545
Alignment:
| Q |
1 |
aaaatgatatttttcaatgttagagatgtggtgaattggagtatttaaacggtgagaatgaagnnnnnnnnctagaaggttcaggagaaatggaacggaa |
100 |
Q |
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| T |
3745233 |
aaaatgatatttttcaatgttagagatgtggtgaattggagtatttaaacggtgagaatgaagaaaaaaa-ctagaaggttcaggagaaatggaacggaa |
3745331 |
T |
|
| Q |
101 |
acacagtagggacatttgaaagttctagtagtttcgagtttagaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745332 |
acacagtagggacatttgaaagttctagtagtttcgagtttagaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttg |
3745431 |
T |
|
| Q |
201 |
taccttctagagtcgtttgacttttggtcaatcctctctggctctctcgcactcccacatgta-tttatttattttagatagaaaaaatcatcataatca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
3745432 |
taccttctagagtcgtttgacttttggtcaatcctctctggctctctcgcactcccacatgtatttttttttttttagatagaaaaaatcatcataatca |
3745531 |
T |
|
| Q |
300 |
tggacacactccct |
313 |
Q |
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|||||||||||||| |
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| T |
3745532 |
tggacacactccct |
3745545 |
T |
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