View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_34 (Length: 307)
Name: NF20983_high_34
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 43240727 - 43241005
Alignment:
| Q |
14 |
attatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattact |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43240727 |
attatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatgattgtaaactagacaacattact |
43240826 |
T |
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| Q |
114 |
acacttcattaggaaattctatgattgttgaattggctgcaaaaataataaatgccttatcatatctacattggctttttcgattatcttaaataaatgt |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43240827 |
acacttcattaggaaattccatgattgttgaattggctgcaaaaattataaatgccttatcatatctacattggctttttcgatgatcttaaataaatgt |
43240926 |
T |
|
| Q |
214 |
ctcccgtattatattcaatggacatcgtggtctttgtaacttagtatatcgatggttgaatatgtagagtgttttactt |
292 |
Q |
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| T |
43240927 |
ctcccgtattatattcaatggacatcgtggtctttgtaacttagtatatcgatggttgaatatgtagagtgttttactt |
43241005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 38927837 - 38927688
Alignment:
| Q |
14 |
attatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattact |
113 |
Q |
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||||||||||| ||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
38927837 |
attatacttgcagaatttcggatatttttctctattgtac-atcattaatttttaagtcagattatacacttttatgattgtacactagaaaacattact |
38927739 |
T |
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| Q |
114 |
acacttcattaggaaattctatgattgttgaattggctgcaaaaataataaat |
166 |
Q |
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| T |
38927738 |
--gtttcattaggagattccttgattgttgaattggatgcaacaataataaat |
38927688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 43230152 - 43230225
Alignment:
| Q |
159 |
taataaatgccttatcatatctacattggctttttcgattatcttaaataaatgtctcccgtattatattcaat |
232 |
Q |
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||||||||||||||||||||||||||||| |||||| || ||||| | ||||||| ||||| |||||||||||| |
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| T |
43230152 |
taataaatgccttatcatatctacattggttttttcaatgatcttgagtaaatgtatcccgcattatattcaat |
43230225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 43246892 - 43246929
Alignment:
| Q |
159 |
taataaatgccttatcatatctacattggctttttcga |
196 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
43246892 |
taatacatgccttatcatatctacattggctttttcga |
43246929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 43253357 - 43253394
Alignment:
| Q |
159 |
taataaatgccttatcatatctacattggctttttcga |
196 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
43253357 |
taatacatgccttatcatatctacattggctttttcga |
43253394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 3570894 - 3570745
Alignment:
| Q |
14 |
attatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattact |
113 |
Q |
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|
||||||||||| ||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
3570894 |
attatacttgcagaatttcggatatttttctctattgtac-atcattaatttttaagtcagattatacacttttatgattgtacactagaaaacattact |
3570796 |
T |
|
| Q |
114 |
acacttcattaggaaattctatgattgttgaattggctgcaaaaataataaat |
166 |
Q |
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|||||||||| |||| ||||||||||||||| ||||| |||||||||| |
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| T |
3570795 |
--gtttcattaggagattccttgattgttgaattggatgcaacaataataaat |
3570745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 46354263 - 46354114
Alignment:
| Q |
14 |
attatacttgcggaatttcggctattcatctctattgtaccatcattaattattaagtcagattatacacttttatggttgtaaactagacaacattact |
113 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
46354263 |
attatacttgcagaatttcagctatttttctctattgtac-atcattaatttttaaatcagattatacacttttatgattgtacactagaaaacattact |
46354165 |
T |
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| Q |
114 |
acacttcattaggaaattctatgattgttgaattggctgcaaaaataataaat |
166 |
Q |
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|||||||||| |||| |||| |||||||||| ||||| |||||||||| |
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| T |
46354164 |
--gtttcattaggagattccttgatcgttgaattggatgcaacaataataaat |
46354114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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