View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20983_high_36 (Length: 298)
Name: NF20983_high_36
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20983_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 21612469 - 21612217
Alignment:
| Q |
1 |
tcattatcattttaatttgtgaatttccttaagatttggaatgactaaannnnnnncattccaataacaacagcttcacccataacaccataa------- |
93 |
Q |
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| T |
21612469 |
tcattatcactttaatttgtgaatttccttaagatttggaatgactaaatttttttcattccaatgacaacagcttcacccataacaccataagtcttct |
21612370 |
T |
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| Q |
94 |
--------ttcttcttcttccataggtcttctcataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21612369 |
tcttcttcttcttcttcttccataggtcttctcataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctt |
21612270 |
T |
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| Q |
186 |
aaaatctttgatttgcgttgttgaaactgcaaattggaaatcatcttcaagtt |
238 |
Q |
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| T |
21612269 |
aaaatctttgatttgcgttgttgaaactgcaaatcggaaatcatcttcaagtt |
21612217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 5659914 - 5659686
Alignment:
| Q |
1 |
tcattatcattttaatttgtgaatttccttaagatttggaatgactaaannnnnnncattccaataacaacagcttcacccataacaccataattc---- |
96 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| || |
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| T |
5659914 |
tcattatcattttaatttgtgaatttctttaagatttggaatgactaaattttttttattccaatgacaacaacttcacccataacaccataagtcgtcg |
5659815 |
T |
|
| Q |
97 |
--ttcttcttccataggtcttctcataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgcttaaaatcttt |
194 |
Q |
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| T |
5659814 |
tcttcttcttccataggtcttctcataacaccatcaaacgaaaattcgttttcaattcctcttaaacaaatgaaaatcggaaatcatgctcaaaatcgtt |
5659715 |
T |
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| Q |
195 |
gatt----tgcgttgttgaaactgcaaat |
219 |
Q |
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|||| ||||||||||||| ||||||| |
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| T |
5659714 |
gatttgcatgcgttgttgaaattgcaaat |
5659686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 21612190 - 21612132
Alignment:
| Q |
236 |
gttcctcttttgattgggtactgaaatcgtgttccaattctccttcatctgtgctcctc |
294 |
Q |
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| T |
21612190 |
gttcctcttttgattgggtacttaaatcgtgttccaattctccttcatctgtgttcctc |
21612132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 5659647 - 5659588
Alignment:
| Q |
236 |
gttcctcttttgattggg-tactgaaatcgtgttccaattctccttcatctgtgctcctc |
294 |
Q |
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| T |
5659647 |
gttcctcttttgattggggtactgaaatcgtgttccaattctccttcatatgtgttcctc |
5659588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 21612601 - 21612570
Alignment:
| Q |
1 |
tcattatcattttaatttgtgaatttccttaa |
32 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
21612601 |
tcattatcattttaatttgtgaatttccttaa |
21612570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 44633494 - 44633245
Alignment:
| Q |
2 |
cattatcattttaatttgtgaatttccttaagatttggaatgactaaannnnnnncattccaataacaacagcttcacccataacaccataa------tt |
95 |
Q |
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||||||||||||| ||| |||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| || |
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| T |
44633494 |
cattatcatttta-tttctgaatttctttaagatttggaatgactaatttttttttattacaatgacaacagcttcacccataacaccataagtagtctt |
44633396 |
T |
|
| Q |
96 |
cttcttcttccataggtcttctc--------ataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgcttaa |
187 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44633395 |
cttcttcttccataggtcttctcgtaacaccataacaccatcaaatgaaaattcgttttcagttcctcttgaacaaatgaaaatcggaaatcatgctcaa |
44633296 |
T |
|
| Q |
188 |
aatctttgatttgcgttgttgaaactgcaaattggaaatcatcttcaagtt |
238 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44633295 |
aatcgttgatttgcgttgttgaaactgcaaattgcaaatcatcttcaagtt |
44633245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 44633218 - 44633161
Alignment:
| Q |
236 |
gttcctcttttgattgggtactgaaatcgtgttccaattctccttcatctgtgctcctc |
294 |
Q |
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| T |
44633218 |
gttcctcttttgattgggtgctgaaa-cgtgttccaattctccttcatctgtgttcctc |
44633161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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