View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_high_40 (Length: 281)

Name: NF20983_high_40
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_high_40
NF20983_high_40
[»] chr8 (10 HSPs)
chr8 (220-281)||(44633496-44633557)
chr8 (224-281)||(39270419-39270476)
chr8 (224-281)||(39567471-39567528)
chr8 (224-281)||(45377523-45377580)
chr8 (87-127)||(39568382-39568422)
chr8 (248-281)||(39269686-39269719)
chr8 (244-281)||(45378302-45378339)
chr8 (87-127)||(44633648-44633688)
chr8 (90-127)||(39269568-39269605)
chr8 (244-281)||(39568269-39568306)
[»] chr6 (7 HSPs)
chr6 (220-281)||(21612602-21612663)
chr6 (220-281)||(21612470-21612531)
chr6 (224-281)||(21283557-21283614)
chr6 (220-281)||(5659915-5659976)
chr6 (87-120)||(21612769-21612802)
chr6 (248-277)||(21283082-21283111)
chr6 (87-127)||(5660065-5660105)
[»] scaffold0031 (5 HSPs)
scaffold0031 (224-281)||(128992-129049)
scaffold0031 (248-281)||(123693-123726)
scaffold0031 (248-281)||(134564-134597)
scaffold0031 (87-127)||(123568-123608)
scaffold0031 (87-127)||(134444-134484)
[»] chr7 (5 HSPs)
chr7 (224-281)||(26025297-26025354)
chr7 (248-281)||(21709414-21709447)
chr7 (224-281)||(21710193-21710249)
chr7 (248-281)||(26025648-26025681)
chr7 (87-127)||(26025740-26025780)
[»] chr4 (16 HSPs)
chr4 (224-281)||(702043-702100)
chr4 (224-281)||(757085-757142)
chr4 (224-281)||(770342-770399)
chr4 (224-281)||(35055747-35055804)
chr4 (224-274)||(33074961-33075011)
chr4 (248-281)||(702411-702444)
chr4 (248-281)||(756758-756791)
chr4 (248-281)||(770710-770743)
chr4 (224-281)||(16038674-16038731)
chr4 (244-281)||(16039437-16039474)
chr4 (244-281)||(35060215-35060252)
chr4 (87-127)||(702524-702564)
chr4 (87-127)||(756631-756671)
chr4 (87-127)||(770823-770863)
chr4 (87-127)||(16039552-16039592)
chr4 (87-127)||(35060327-35060367)
[»] chr1 (5 HSPs)
chr1 (224-281)||(51598372-51598429)
chr1 (224-281)||(16962999-16963056)
chr1 (87-127)||(16962154-16962194)
chr1 (87-127)||(51599307-51599347)
chr1 (248-281)||(51599192-51599225)
[»] chr3 (3 HSPs)
chr3 (230-274)||(36982928-36982972)
chr3 (230-274)||(37008367-37008411)
chr3 (87-127)||(21816053-21816093)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 44633557 - 44633496
Alignment:
Q  220 cttaaacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44633557 cttaaacaacaaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 44633496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 39270419 - 39270476
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||    
T  39270419 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatctaaatctaaac 39270476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 39567528 - 39567471
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  39567528 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaac 39567471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 45377580 - 45377523
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  45377580 aacaacaaaactcatcaaataaaactttacatttatcatttgaaatccaaatctaaac 45377523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 39568422 - 39568382
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  39568422 ctcaagcacacgtgtcattttcgcattggttgaaatttata 39568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 39269686 - 39269719
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  39269686 ttttacctttatcatatgaaatccaaatctaaac 39269719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 45378339 - 45378302
Alignment:
Q  244 aaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    |||| |||||||||||||||||||||||||||||||||    
T  45378339 aaaactttacctttatcatatgaaatccaaatctaaac 45378302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 44633688 - 44633648
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  44633688 ctcaagcacacgtgtcattttcgcattggttggaatttata 44633648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 39269568 - 39269605
Alignment:
Q  90 aagcacacatgtcattttcgcattggttgaaatttata 127  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  39269568 aagcacacgtgtcattttcgcattggttggaatttata 39269605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 39568306 - 39568269
Alignment:
Q  244 aaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  39568306 aaaactttacctttatcatttgaaatccaaatctaaac 39568269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 21612663 - 21612602
Alignment:
Q  220 cttaaacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21612663 cttaaacaacaaaactcatcaaataaaattttacctttatcatatgaaatccaaatcaaaac 21612602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 21612531 - 21612470
Alignment:
Q  220 cttaaacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  21612531 cttaaacaacaaaacttatcaaataaaattttacctttatcatatgaaatccaaatcaaaac 21612470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 21283557 - 21283614
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21283557 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaac 21283614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 5659976 - 5659915
Alignment:
Q  220 cttaaacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||||    
T  5659976 cttaaacaacaaaactcatcatataatactttacctttatcatatgaaatcctaatctaaac 5659915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 21612802 - 21612769
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaa 120  Q
    ||||||||||||||||||||||||||||||||||    
T  21612802 ctcaagcacacatgtcattttcgcattggttgaa 21612769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 21283082 - 21283111
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatct 277  Q
    ||||||||||||||||||||||||||||||    
T  21283082 ttttacctttatcatatgaaatccaaatct 21283111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 5660105 - 5660065
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||| ||||||||| ||||||||    
T  5660105 ctcaagcacacgtgtcattttcacattggttggaatttata 5660065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 128992 - 129049
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  128992 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaac 129049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 123693 - 123726
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  123693 ttttacctttatcatatgaaatccaaatctaaac 123726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 134564 - 134597
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  134564 ttttacctttatcatatgaaatccaaatctaaac 134597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 123568 - 123608
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  123568 ctcaagcacacgtgtcattttcgcattggttggaatttata 123608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 134444 - 134484
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  134444 ctcaagcacacgtgtcattttcgcattggttggaatttata 134484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 26025354 - 26025297
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  26025354 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaac 26025297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 21709414 - 21709447
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  21709414 ttttacctttatcatatgaaatccaaatctaaac 21709447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 21710193 - 21710249
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| ||||| ||||||| |||| ||||| |||||||||||||||||||||||||||    
T  21710193 aacaacaaaacacatcaaa-aaaactttacatttatcatatgaaatccaaatctaaac 21710249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 26025681 - 26025648
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  26025681 ttttacctttatcatatgaaatccaaatctaaac 26025648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 26025780 - 26025740
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  26025780 ctcaagcacacgtgtcattttcgcattggttggaatttata 26025740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 702100 - 702043
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  702100 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaac 702043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 757085 - 757142
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  757085 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaac 757142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 770399 - 770342
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  770399 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaac 770342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 35055804 - 35055747
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  35055804 aacaacaaaactcatcagataaaattttacatttatcatatgaaatccaaatctaaac 35055747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 33075011 - 33074961
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaa 274  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||| ||||    
T  33075011 aacaagaacactcatcaaataatattttacctttatcatatgaaattcaaa 33074961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 702444 - 702411
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  702444 ttttacctttatcatatgaaatccaaatctaaac 702411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 756758 - 756791
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  756758 ttttacctttatcatatgaaatccaaatctaaac 756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 770743 - 770710
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  770743 ttttacctttatcatatgaaatccaaatctaaac 770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 16038731 - 16038674
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| ||||||||||| |||||| ||||| ||| | |||||||||||||||||||||    
T  16038731 aacaacaaaactcatcagataaaactttacatttcttatatgaaatccaaatctaaac 16038674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 16039474 - 16039437
Alignment:
Q  244 aaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    |||| |||||||||||||||||||||||||||||||||    
T  16039474 aaaactttacctttatcatatgaaatccaaatctaaac 16039437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 35060252 - 35060215
Alignment:
Q  244 aaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    |||| |||||||||||||||||||||||||||||||||    
T  35060252 aaaactttacctttatcatatgaaatccaaatctaaac 35060215  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 702564 - 702524
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  702564 ctcaagcacacgtgtcattttcgcattggttggaatttata 702524  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 756631 - 756671
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  756631 ctcaagcacacgtgtcattttcgcattggttggaatttata 756671  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 770863 - 770823
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  770863 ctcaagcacacgtgtcattttcgcattggttggaatttata 770823  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 16039592 - 16039552
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||| |||||||||||||||||||||||||  ||||||||    
T  16039592 ctcaaacacacatgtcattttcgcattggttagaatttata 16039552  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 35060367 - 35060327
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| ||||||||| |||||||||| ||||||||    
T  35060367 ctcaagcacacgtgtcatttttgcattggttggaatttata 35060327  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 51598429 - 51598372
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  51598429 aacaacaaaactcatcaaataaaactttacatttatcatatgaaatccaaatctaaac 51598372  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 16962999 - 16963056
Alignment:
Q  224 aacaataaaactcatcaaataaaattttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  16962999 aacaacaaaactcatcagataaaactttacatttatcatatgaaatccaaatctaaac 16963056  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 16962154 - 16962194
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  16962154 ctcaagcacacatgtcattttcgcattggttggaatttata 16962194  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 51599347 - 51599307
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  51599347 ctcaagcacacatgtcattttcgcattggttggaatttata 51599307  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 51599225 - 51599192
Alignment:
Q  248 ttttacctttatcatatgaaatccaaatctaaac 281  Q
    ||||||||||||||||||||||||||||||||||    
T  51599225 ttttacctttatcatatgaaatccaaatctaaac 51599192  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 36982928 - 36982972
Alignment:
Q  230 aaaactcatcaaataaaattttacctttatcatatgaaatccaaa 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  36982928 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 36982972  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 37008367 - 37008411
Alignment:
Q  230 aaaactcatcaaataaaattttacctttatcatatgaaatccaaa 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  37008367 aaaactcatcaaataaaattttacctttatcatatgaaattcaaa 37008411  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 21816053 - 21816093
Alignment:
Q  87 ctcaagcacacatgtcattttcgcattggttgaaatttata 127  Q
    ||||||||||| ||||||||| |||||||||| ||||||||    
T  21816053 ctcaagcacacgtgtcatttttgcattggttggaatttata 21816093  T

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