View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20983_high_41 (Length: 281)

Name: NF20983_high_41
Description: NF20983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20983_high_41
NF20983_high_41
[»] chr4 (6 HSPs)
chr4 (141-264)||(52796839-52796962)
chr4 (79-146)||(52794481-52794549)
chr4 (44-81)||(52794421-52794458)
chr4 (117-165)||(52798641-52798689)
chr4 (185-263)||(52760850-52760928)
chr4 (199-263)||(52798787-52798851)
[»] chr8 (1 HSPs)
chr8 (117-158)||(39710357-39710398)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 141 - 264
Target Start/End: Original strand, 52796839 - 52796962
Alignment:
Q  141 gattctcagcatttcattgtcatcaactactgttgcagcagtgaatgctccttcaccaagtcctaatcgttcgggttctgcgaggatgagtgggtctgtt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52796839 gattctcagcatttcattgtcatcaactactgttgcagcagtgaatgctccttcaccaagtcctaatcgttcgggttctgcgaggatgagtgggtctgtt 52796938  T
Q  241 ggggtcagtgttgtggtggctttt 264  Q
    ||||||||||||||||||||||||    
T  52796939 ggggtcagtgttgtggtggctttt 52796962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 52794481 - 52794549
Alignment:
Q  79 tccccaaacaactaatcaatgtcgagatctagttttc-tttttcttttgatcgtatcaatgttgattct 146  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  52794481 tccccaaacaactaatcaatgacgagatctagttttcttttttcttttgatcgtatcaatgttgattct 52794549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 52794421 - 52794458
Alignment:
Q  44 cacttactcactcttatcacacatttcaatttcaatcc 81  Q
    |||| |||||||||||||||||||||||||||||||||    
T  52794421 cactcactcactcttatcacacatttcaatttcaatcc 52794458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 52798641 - 52798689
Alignment:
Q  117 ttttcttttgatcgtatcaatgttgattctcagcatttcattgtcatca 165  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  52798641 ttttcttttgatcgtatcaatgttgattatcaacattttattgttatca 52798689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 52760928 - 52760850
Alignment:
Q  185 atgctccttcaccaagtcctaatcgttcgggttctgcgaggatgagtgggtctgttggggtcagtgttgtggtggcttt 263  Q
    |||||||  ||||||||||| ||| ||| |||||||||||  ||||||| | ||||||  ||| |||||||||||||||    
T  52760928 atgctccagcaccaagtcctcatcattctggttctgcgagattgagtggttatgttggtatcaatgttgtggtggcttt 52760850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 52798787 - 52798851
Alignment:
Q  199 agtcctaatcgttcgggttctgcgaggatgagtgggtctgttggggtcagtgttgtggtggcttt 263  Q
    |||||||| | |||||||||| | ||| ||||||| |||| ||| || |||||||||||||||||    
T  52798787 agtcctaaacattcgggttctaccaggttgagtggttctgatggtgttagtgttgtggtggcttt 52798851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 39710357 - 39710398
Alignment:
Q  117 ttttcttttgatcgtatcaatgttgattctcagcatttcatt 158  Q
    |||||||||||| ||||||||||||||||| |||| ||||||    
T  39710357 ttttcttttgattgtatcaatgttgattcttagcacttcatt 39710398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University